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[185282_s_at]

Description F56A11.5 /REP_DB=WormBase Gene ID /WP=CE17120 /TR=O44517 /GB=AAB92074.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 84      6grp_total > 94      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 594
1 2 3 4 range
A 566.9
(-3)
P 		792.2
(0.2)
P 		865.2
(1.3)
P 		988
(3)
P 		421
B 470.8
(-3)
P 		844.8
(0.8)
P 		926.5
(1.6)
P 		1064.8
(3)
P 		594
C 523
(-3)
P 		744
(0)
P 		781.6
(0.5)
P 		964
(3)
P 		441
avr 520.2
(-3) 		793.7
(0.4) 		857.8
(1.2) 		1005.6
(3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 548
1 2 3 4 5 6 range
A 515.4
(-2.1)
P 		654.4
(0.6)
P 		466.8
(-3)
P 		738.5
(2.2)
P 		780
(3)
P 		732.9
(2.1)
P 		313
B 376.1
(-2.9)
P 		469.5
(-1.9)
P 		367.4
(-3)
P 		626.1
(-0.2)
P 		915.3
(3)
P 		707.6
(0.7)
P 		548
C 563.6
(-2.3)
P 		521.8
(-3)
P 		558.5
(-2.3)
P 		614.9
(-1.3)
P 		856.5
(3)
P 		770.9
(1.5)
P 		335
avr 485
(-2.7) 		548.6
(-1.7) 		464.2
(-3) 		659.8
(0) 		850.6
(3) 		737.1
(1.2) 		386
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 206.4
(1.5)
P 		172
(-1)
P 		226.2
(3)
P 		144.6
(-3)
P 		82
B 150.1
(-3)
P 		208.7
(1.6)
P 		214.7
(2)
P 		226.9
(3)
P 		77
C 173.1
(-2.4)
P 		213.9
(-0.2)
P 		272.4
(3)
P 		162.5
(-3)
P 		110
avr 176.5
(-3) 		198.2
(-0.9) 		237.8
(3) 		178
(-2.9) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 95
(-3)
P 		232.7
(2.9)
P 		101.7
(-2.7)
P 		187.3
(0.9)
P 		235.4
(3)
P 		178.4
(0.6)
P 		140
B 130.9
(-2.1)
P 		156.3
(-1.6)
P 		89.2
(-3)
P 		165.8
(-1.4)
P 		371.9
(3)
P 		263.9
(0.7)
P 		283
C 208.9
(0.3)
P 		159.2
(-1.6)
P 		142.1
(-2.3)
P 		123.7
(-3)
P 		277.2
(3)
P 		258.1
(2.3)
P 		154
avr 144.9
(-1.9) 		182.7
(-0.7) 		111
(-3) 		158.9
(-1.4) 		294.8
(3) 		233.5
(1) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185282_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10440
Sequence Type Exemplar sequence
Representative Public ID F56A11.5 NCBI
Target Description F56A11.5 /REP_DB=WormBase Gene ID /WP=CE17120 /TR=O44517 /GB=AAB92074.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067547 NCBI Caenorhabditis elegans F56A11.5 (F56A11.5) mRNA, complete cds. 11/11 None
SNAP00000007068 ENSEMBL cdna:SNAP chromosome:CEL140:IV:568474:570834:-1 11/11 None
GENEFINDER00000007072 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:568474:570834:-1 11/11 None
F56A11.5 ENSEMBL cdna:known chromosome:CEL140:IV:568433:570843:-1 gene:F56A11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:568473-570834(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56A11.5
Entrez Gene 176883 Entrez gene
SwissProt O44517 EMBL-EBI
WormBase CE17120 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:265162_AT molybdenum cofactor sulfurase family protein at
DROSOPHILA_2:1624617_AT dm
DROSGENOME1:146905_AT dm
HG-U133_PLUS_2:218865_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U133A:218865_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U133A_2:218865_AT MOCO sulphurase C-terminal domain containing 1 hs
HU35KSUBA:RC_AA190676_AT MOCO sulphurase C-terminal domain containing 1 hs
U133_X3P:G12232404_3P_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U95B:48113_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U95B:48114_G_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U95C:63957_S_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U95C:63985_AT MOCO sulphurase C-terminal domain containing 1 hs
U133_X3P:HS2.384844.1.S1_3P_AT MOCO sulphurase C-terminal domain containing 1 hs
HG-U133_PLUS_2:1561780_AT MOCO sulphurase C-terminal domain containing 1 hs
MG-U74BV2:112972_AT MOCO sulphurase C-terminal domain containing 1 mm
MOE430A:1428005_AT MOCO sulphurase C-terminal domain containing 1 mm
MOUSE430A_2:1428005_AT MOCO sulphurase C-terminal domain containing 1 mm
MOUSE430_2:1428005_AT MOCO sulphurase C-terminal domain containing 1 mm
MOUSE430_2:1446074_AT MOCO sulphurase C-terminal domain containing 1, mRNA (cDNA clone MGC:41325 IMAGE:1054720) mm
MOE430B:1446074_AT MOCO sulphurase C-terminal domain containing 1, mRNA (cDNA clone MGC:41325 IMAGE:1054720) mm
MU19KSUBA:TC23981_AT MOCO sulphurase C-terminal domain containing 1, mRNA (cDNA clone MGC:41325 IMAGE:1054720) mm
MU19KSUBC:TC39285_AT MOCO sulphurase C-terminal domain containing 1, mRNA (cDNA clone MGC:41325 IMAGE:1054720) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5184 neuropeptide hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB92074 Hypothetical protein F56A11.5 [Caenorhabditis elegans] ref|NP_499948.1| F56A11.5 [Caenorhabditis elegans] 0.0
blast CAE58471 Hypothetical protein CBG01611 [Caenorhabditis briggsae] 1.0E-174
blast CAB05497 Hypothetical protein F22B8.7 [Caenorhabditis elegans] ref|NP_507051.2| F22B8.7 [Caenorhabditis elegans] 4.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 3.7E-58
Pfam IPR005302 EMBL-EBI MOSC domain 1.0E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499948.1 1 10-32
F56A11.5 1 10-32
SNAP00000007068 1 10-32
GENEFINDER00000007072 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:185282_S_AT
ggaacctggaactcgtgtgatcatgtacgatactggattgttcacagagagaacttgcaa
aacggaagaaggatggtggaataatgaagttcccaagagaatcgatgataccgcctacgc
cgacctggctccctacatgattacaagccaagcttctctggatgacctcaactcaaagct
cgatcaaaatgtctcctcaatcaacttccgtccatgtatcgttgtagacgactgtgccgc
atgggatgaagacaaatggcttgatctacgtatcggcgatgttgaaatgcagtgtttcaa
gccgtgtaccagatgcattctcaccaccgtcaacccagaaactggaaccaaggacaagga
catgcaaccgttgaagaagctccgcgagtttcgtcttggtcccggaaaactgcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACCTGGAACTCGTGTGATCATG 198 531 510 Antisense
CAAGCCAAGCTTCTCTGGATGACCT 97 187 653 Antisense
GATGACCTCAACTCAAAGCTCGATC 574 411 670 Antisense
AGCTCGATCAAAATGTCTCCTCAAT 286 81 686 Antisense
AATCAACTTCCGTCCATGTATCGTT 687 169 708 Antisense
TGTAGACGACTGTGCCGCATGGGAT 652 557 732 Antisense
ATGGCTTGATCTACGTATCGGCGAT 410 51 765 Antisense
AATGCAGTGTTTCAAGCCGTGTACC 350 163 795 Antisense
GCCGTGTACCAGATGCATTCTCACC 629 281 810 Antisense
TGCAACCGTTGAAGAAGCTCCGCGA 142 575 872 Antisense
TCGTCTTGGTCCCGGAAAACTGCGC 69 605 900 Antisense
Sequence Source Affymetrix Proprietary Database