[Home] | [Total List]

[185280_at]

Description H43E16.1 /REP_DB=WormBase Gene ID /WP=CE19949 /TR=Q9N5K0 /GB=AAF39909.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 13      6grp_highest_nonorm > 70      6grp_total > 12      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 543
1 2 3 4 range
A 428.2
(1.4)
P 		569.8
(3)
P 		379.1
(0.9)
P 		36.3
(-3)
A 		534
B 421.4
(1.9)
P 		502.2
(2.9)
P 		508
(3)
P 		37.8
(-3)
A 		470
C 489.5
(2)
P 		579.7
(3)
P 		465.8
(1.7)
P 		43.1
(-3)
A 		537
avr 446.4
(1.8) 		550.6
(3) 		451
(1.8) 		39.1
(-3) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 297.6
(-0.6)
P 		580.3
(3)
P 		388.4
(0.6)
P 		128.2
(-2.7)
P 		105.3
(-3)
P 		110.2
(-2.9)
P 		475
B 445.4
(2.1)
P 		498.5
(3)
P 		319.2
(-0.1)
P 		186.2
(-2.4)
P 		209.3
(-2)
P 		149.7
(-3)
P 		349
C 403.9
(2.1)
P 		449.4
(3)
P 		329
(0.7)
P 		178.9
(-2.3)
P 		156.2
(-2.7)
P 		140.7
(-3)
P 		309
avr 382.3
(1) 		509.4
(3) 		345.5
(0.4) 		164.4
(-2.5) 		156.9
(-2.6) 		133.5
(-3) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 155.9
(3)
P 		123.7
(1.7)
P 		99.1
(0.7)
P 		5.3
(-3)
A 		151
B 134.4
(3)
P 		124
(2.5)
P 		117.7
(2.2)
P 		8
(-3)
A 		126
C 162
(2.8)
P 		166.7
(3)
P 		162.4
(2.8)
P 		7.3
(-3)
A 		159
avr 150.8
(3) 		138.1
(2.5) 		126.4
(2) 		6.9
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 54.9
(-2.1)
P 		206.4
(3)
P 		84.6
(-1.1)
P 		32.5
(-2.8)
P 		31.8
(-2.8)
P 		26.8
(-3)
P 		180
B 155
(2.4)
P 		165.9
(3)
P 		77.5
(-1.5)
P 		49.3
(-3)
P 		85
(-1.2)
P 		55.8
(-2.7)
P 		117
C 149.7
(3)
P 		137.1
(2.3)
P 		83.7
(-0.5)
P 		36
(-3)
P 		50.5
(-2.2)
P 		47.1
(-2.4)
P 		114
avr 119.9
(0.7) 		169.8
(3) 		81.9
(-1) 		39.3
(-3) 		55.8
(-2.2) 		43.2
(-2.8) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5547
Sequence Type Exemplar sequence
Representative Public ID H43E16.1 NCBI
Target Description H43E16.1 /REP_DB=WormBase Gene ID /WP=CE19949 /TR=Q9N5K0 /GB=AAF39909.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062957(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062957 NCBI Caenorhabditis elegans H43E16.1 (H43E16.1) mRNA, complete cds. 11/11 A 
SNAP00000038934 ENSEMBL cdna:SNAP chromosome:CEL140:II:6677470:6679968:1 11/11 None
GENEFINDER00000038947 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6677511:6683296:1 11/11 None
H43E16.1 ENSEMBL cdna:known chromosome:CEL140:II:6674211:6679306:1 gene:H43E16.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6674256-6679231(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H43E16.1
Entrez Gene 174101 Entrez gene
SwissProt Q9N5K0 EMBL-EBI
WormBase CE19949 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39909 Hypothetical protein H43E16.1 [Caenorhabditis elegans] ref|NP_495358.1| H43E16.1 [Caenorhabditis elegans] 0.0
blast AAC46692 Hypothetical protein C18H9.8 [Caenorhabditis elegans] ref|NP_495359.1| C18H9.8 [Caenorhabditis elegans] 0.0
blast CAE66044 Hypothetical protein CBG11243 [Caenorhabditis briggsae] 0.0
blast AAF39909 Hypothetical protein H43E16.1 [Caenorhabditis elegans] ref|NP_495358.1| H43E16.1 [Caenorhabditis elegans] 1.0E-104
blast AAF39909 Hypothetical protein H43E16.1 [Caenorhabditis elegans] ref|NP_495358.1| H43E16.1 [Caenorhabditis elegans] 1.0E-101
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 2.0E-91
blast AAC24428 Hypothetical protein T19D12.1 [Caenorhabditis elegans] ref|NP_495357.1| T19D12.1 [Caenorhabditis elegans] 5.0E-80
blast AAO38593 Hypothetical protein T19D12.2a [Caenorhabditis elegans] ref|NP_495356.3| T19D12.2a [Caenorhabditis elegans] 4.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495358.1 1 13-35
H43E16.1 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:185280_AT
gtagcatccagtacatctaacattgtctcatccacttcccaagctccaacatgtgcttct
ccgtacagtggaaagattgcaactgtttttgaattgagtgcaaacagtgcgacgaatgtt
gtaaactttgtgaccaataatttgtacaactcagtcaactatgattttacttcaactaca
caagcaatcaatgtaccatatggacaaaccgacagttatcctaccaataaatttttacaa
tatggtggggcaaagagtttaacgaatcttcaagacaacatatctgatttattagatagt
gctattttgatgatggattccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGCATCCAGTACATCTAACATTG 604 457 3016 Antisense
CATCTAACATTGTCTCATCCACTTC 286 213 3029 Antisense
CATGTGCTTCTCCGTACAGTGGAAA 74 211 3065 Antisense
GAATTGAGTGCAAACAGTGCGACGA 261 323 3106 Antisense
GTGCGACGAATGTTGTAAACTTTGT 94 475 3122 Antisense
GATTTTACTTCAACTACACAAGCAA 488 429 3178 Antisense
ACACAAGCAATCAATGTACCATATG 602 107 3193 Antisense
GTACCATATGGACAAACCGACAGTT 110 453 3208 Antisense
CAAACCGACAGTTATCCTACCAATA 474 191 3220 Antisense
GAGTTTAACGAATCTTCAAGACAAC 53 397 3270 Antisense
GCTATTTTGATGATGGATTCCACAA 331 303 3316 Antisense
Sequence Source Affymetrix Proprietary Database