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[185279_at]

Description R08F11.6 /REP_DB=WormBase Gene ID /WP=CE12590 /TR=O01891 /GB=AAB54248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.9
(-3)
A 		4.5
(0.8)
A 		3.7
(-0.4)
A 		6
(3)
A 		4
B 1.9
(-3)
A 		6.9
(3)
A 		6
(1.9)
A 		2.7
(-2)
A 		5
C 4.8
(-2.4)
A 		2
(-3)
A 		3.3
(-2.7)
A 		31.8
(3)
A 		30
avr 2.9
(-3) 		4.5
(-2.1) 		4.3
(-2.2) 		13.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 2.4
(-3)
A 		2.4
(-3)
A 		4.5
(-1.8)
A 		4.9
(-1.5)
A 		12.7
(3)
A 		2.4
(-3)
A 		10
B 3.1
(-2.8)
A 		3.2
(-2.8)
A 		52.2
(3)
A 		5.1
(-2.6)
A 		3.7
(-2.7)
A 		1.3
(-3)
A 		51
C 2.7
(-1.7)
A 		1.8
(-2.7)
A 		1.5
(-3)
A 		7
(3)
A 		3.6
(-0.7)
A 		1.6
(-2.9)
A 		6
avr 2.7
(-2.7) 		2.5
(-2.8) 		19.4
(3) 		5.7
(-1.7) 		6.7
(-1.3) 		1.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-3)
A 		1
(3)
A 		1
(3)
A 		0.9
(1)
A 		0
B 0.6
(-3)
A 		1.7
(3)
A 		1.4
(1.4)
A 		0.6
(-3)
A 		1
C 1.6
(-1.8)
A 		0.6
(-3)
A 		1.2
(-2.3)
A 		5.4
(3)
A 		5
avr 1
(-3) 		1.1
(-2.5) 		1.2
(-2.1) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.9
(-2.1)
A 		1
(-1.9)
A 		1.2
(-1.6)
A 		3.8
(3)
A 		0.6
(-2.6)
A 		3
B 1.1
(-2.7)
A 		1.1
(-2.7)
A 		12.7
(3)
A 		1.3
(-2.6)
A 		1.5
(-2.5)
A 		0.5
(-3)
A 		12
C 1
(0.6)
A 		0.6
(-1.8)
A 		0.4
(-3)
A 		1.4
(3)
A 		1.2
(1.8)
A 		0.5
(-2.4)
A 		1
avr 0.8
(-2.6) 		0.9
(-2.4) 		4.7
(3) 		1.3
(-1.9) 		2.2
(-0.6) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15355
Sequence Type Exemplar sequence
Representative Public ID R08F11.6 NCBI
Target Description R08F11.6 /REP_DB=WormBase Gene ID /WP=CE12590 /TR=O01891 /GB=AAB54248.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071648 NCBI Caenorhabditis elegans R08F11.6 (R08F11.6) mRNA, complete cds. 11/11 A 
SNAP00000031719 ENSEMBL cdna:SNAP chromosome:CEL140:V:3789970:3797535:1 11/11 None
GENEFINDER00000031728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3795190:3797535:1 11/11 None
R08F11.6 ENSEMBL cdna:known chromosome:CEL140:V:3794547:3797535:1 gene:R08F11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3794526-3797535(+) 47.59 100.0
Public Domain and Genome References
Gene Title
Ensembl R08F11.6
Entrez Gene 187707 Entrez gene
SwissProt O01891 EMBL-EBI
WormBase CE35360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54249 Hypothetical protein R08F11.7 [Caenorhabditis elegans] ref|NP_504048.1| R08F11.7 [Caenorhabditis elegans] 0.0
blast CAE65447 Hypothetical protein CBG10411 [Caenorhabditis briggsae] 0.0
blast T18779 transposase containing protein - Caenorhabditis elegans 0.0
blast AAF60591 Hypothetical protein Y45G12C.13 [Caenorhabditis elegans] 0.0
blast T19261 hypothetical protein C14A6.4 - Caenorhabditis elegans 0.0
blast T20782 hypothetical protein F11D11.9 - Caenorhabditis elegans 0.0
blast AAB54248 Hypothetical protein R08F11.6 [Caenorhabditis elegans] ref|NP_504049.2| R08F11.6 [Caenorhabditis elegans] 1.0E-115
blast CAE65445 Hypothetical protein CBG10409 [Caenorhabditis briggsae] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR009716 EMBL-EBI Ferroportin1 1.0E-5
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR009716 EMBL-EBI Ferroportin1 1.0E-5
Pfam IPR002007 EMBL-EBI Animal haem peroxidase 1.0E-126
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Pfam IPR009716 EMBL-EBI Ferroportin1 1.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504049.2 3 100-122,167-189,199-221
R08F11.6 3 100-122,167-189,199-221
SNAP00000031719 3 1195-1217,1262-1284,1294-1316
GENEFINDER00000031728 3 415-437,482-504,514-536
Sequence
Target Sequence 
>C. ELEGANS:185279_AT
aatcaagttcccgctcttttatatctcgcaattctctttggagcaatcaaccgattattt
ctcaacgcggaaaagtcgatgattgccagagactgggtggtggcgttgaatggtaaaaat
gagctgagcaggcagaatgcaatgctcactggattcgatcaactgctgaatattttgtcg
ccaattgttgtcgggacattgctcaccaaatttggaatgcatcaaaccctcatcgtgttt
ggaatttactcgatgttatctcttttttcaaaacttatatttctgagtttaacatacaat
caaaatgtctctctgcaaaatcgccaagaaggatattgcagtctaccaatttctgacgag
gaaccacttttcaaaccttcaaagccacgaggagttatttccacttactggaaacagaca
acattctgcgctgcatttggcatagctctgttctacaaaacagtgatgggatttgataat
ttagcagttggctacgcaacaagtgcctctgatctctcagtaatcactattggagctcta
aaatcttatggagcagtcgcagggatggtcggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCAAGTTCCCGCTCTTTTATATC 300 171 1429 Antisense
ATATCTCGCAATTCTCTTTGGAGCA 132 21 1449 Antisense
GCTCACTGGATTCGATCAACTGCTG 615 301 1572 Antisense
TGTTGTCGGGACATTGCTCACCAAA 11 563 1614 Antisense
TTGGAATGCATCAAACCCTCATCGT 199 709 1640 Antisense
AATGTCTCTCTGCAAAATCGCCAAG 3 165 1732 Antisense
GACAACATTCTGCGCTGCATTTGGC 368 365 1845 Antisense
GCATTTGGCATAGCTCTGTTCTACA 315 309 1861 Antisense
TTGGCTACGCAACAAGTGCCTCTGA 331 709 1916 Antisense
GTGCCTCTGATCTCTCAGTAATCAC 240 479 1931 Antisense
GGAGCAGTCGCAGGGATGGTCGGAG 563 519 1978 Antisense
Sequence Source Affymetrix Proprietary Database