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[185278_at]

Description F45C12.2 /REP_DB=WormBase Gene ID /WP=CE10438 /TR=O16748 /GB=AAB66202.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 29.3
(-0.8)
A 		3.2
(-3)
A 		36.1
(-0.2)
A 		72.9
(3)
A 		70
B 14.2
(-3)
A 		14.5
(-2.9)
A 		31.8
(2.5)
A 		33.4
(3)
A 		19
C 30.1
(0.7)
A 		36
(3)
P 		20.8
(-3)
A 		27.8
(-0.2)
A 		15
avr 24.5
(-1.5) 		17.9
(-3) 		29.6
(-0.4) 		44.7
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 43.4
(3)
A 		3.4
(-3)
A 		13.3
(-1.5)
A 		6.9
(-2.5)
A 		19.4
(-0.6)
A 		16.3
(-1.1)
A 		40
B 3.1
(-3)
A 		3.2
(-3)
A 		22.5
(3)
A 		6.3
(-2)
A 		4.6
(-2.5)
A 		17.1
(1.3)
A 		19
C 10.3
(-1.6)
A 		16.8
(0.1)
A 		27.6
(3)
A 		5
(-3)
A 		14
(-0.6)
A 		22.7
(1.7)
A 		23
avr 18.9
(2.1) 		7.8
(-2.3) 		21.1
(3) 		6.1
(-3) 		12.7
(-0.4) 		18.7
(2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.7
(3)
A 		0.7
(-3)
A 		9.4
(2.2)
A 		10.7
(3)
A 		10
B 4.5
(-1.6)
A 		3.6
(-3)
A 		7.4
(3)
A 		7.1
(2.5)
A 		4
C 10
(2.6)
A 		10.4
(3)
P 		7.3
(-0.3)
A 		4.7
(-3)
A 		6
avr 8.4
(3) 		4.9
(-3) 		8
(2.3) 		7.5
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 8
(3)
A 		1.2
(-3)
A 		2.9
(-1.5)
A 		1.7
(-2.6)
A 		5.9
(1.1)
A 		4
(-0.5)
A 		7
B 1.1
(-3)
A 		1.1
(-3)
A 		5.5
(2)
A 		1.7
(-2.3)
A 		1.9
(-2.1)
A 		6.4
(3)
A 		5
C 3.8
(-0.5)
A 		5.1
(0.7)
A 		7
(2.5)
A 		1
(-3)
A 		4.5
(0.2)
A 		7.6
(3)
A 		7
avr 4.3
(0.7) 		2.5
(-1.7) 		5.1
(1.8) 		1.5
(-3) 		4.1
(0.5) 		6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185278_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5541
Sequence Type Exemplar sequence
Representative Public ID F45C12.2 NCBI
Target Description F45C12.2 /REP_DB=WormBase Gene ID /WP=CE10438 /TR=O16748 /GB=AAB66202.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061660(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061660 NCBI Caenorhabditis elegans F45C12.2 (F45C12.2) mRNA, complete cds. 10/11 None
SNAP00000033196 ENSEMBL cdna:SNAP chromosome:CEL140:II:1732161:1736466:1 10/11 None
GENEFINDER00000033204 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1732279:1733201:1 11/11 None
F45C12.2 ENSEMBL cdna:known chromosome:CEL140:II:1732279:1733201:1 gene:F45C12.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1732277-1733200(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45C12.2
Entrez Gene 185766 Entrez gene
SwissProt O16748 EMBL-EBI
WormBase CE35932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66202 Hypothetical protein F45C12.2 [Caenorhabditis elegans] ref|NP_494061.2| F45C12.2 [Caenorhabditis elegans] 1.0E-137
blast AAB66202 Hypothetical protein F45C12.2 [Caenorhabditis elegans] ref|NP_494061.2| F45C12.2 [Caenorhabditis elegans] 1.0E-135
blast AAB66202 Hypothetical protein F45C12.2 [Caenorhabditis elegans] ref|NP_494061.2| F45C12.2 [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.19999980926514
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.90000009536743
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0
Sequence
Target Sequence 
>C. ELEGANS:185278_AT
gttctgcgcgtttccaaagcgacactcagttgggaaatcgtcagggagattatgaatgcg
acagagcgtttgattcaagaaagggtcagtgatccgaccggtcaagtggctattgccgtc
gatcccccgagtagttggtccaaaagtgtcacggatttcctggcaagctgctacaagttg
agcccgtcgccgaacttcaaattccttgagctgctggctattctcactgggaagtcacag
tatctgattcttcagtggtttgacacagctgaagaggaaaagcgtgagaagaatcagaag
cttgagacggctacgttcaagcgtcattgtccatggcggaagagacatagactggctagt
gttgagggttttgcaggcgacttacatatccaactttttcagatccagcccctctcgaac
gccaccgccatcccgttcctggaggctgctttccaaaaatcgtctatccccggaagcgtt
gagctctacgaccttcagctgaaaaccaactggtttatttgtgagctaaaggcctggttc
actgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTGCGCGTTTCCAAAGCGACAC 279 443 172 Antisense
TCAAGTGGCTATTGCCGTCGATCCC 179 633 273 Antisense
TCACGGATTTCCTGGCAAGCTGCTA 186 627 320 Antisense
AAGCTGCTACAAGTTGAGCCCGTCG 684 147 336 Antisense
CGTCGCCGAACTTCAAATTCCTTGA 17 245 356 Antisense
ATTCCTTGAGCTGCTGGCTATTCTC 121 9 372 Antisense
GGCTACGTTCAAGCGTCATTGTCCA 391 537 480 Antisense
GCAGGCGACTTACATATCCAACTTT 478 311 544 Antisense
GAGGCTGCTTTCCAAAAATCGTCTA 88 405 613 Antisense
TCCCCGGAAGCGTTGAGCTCTACGA 340 597 638 Antisense
GAGCTAAAGGCCTGGTTCACTGCAA 35 389 694 Antisense
Sequence Source Affymetrix Proprietary Database