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[185276_at]

Description T15B7.10 /REP_DB=WormBase Gene ID /WP=CE13664 /TR=O17027 /GB=AAB69971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 2.4
(-3)
A 		4.9
(-2.7)
A 		5.8
(-2.6)
A 		56.5
(3)
A 		54
B 11.2
(-1.6)
A 		38.7
(3)
A 		2.7
(-3)
A 		24.3
(0.6)
A 		36
C 9.6
(-1.7)
A 		14.2
(-0.7)
A 		3.7
(-3)
A 		30.8
(3)
A 		27
avr 7.7
(-2.3) 		19.3
(-0.2) 		4.1
(-3) 		37.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 5.4
(-2.3)
A 		16.4
(-0.1)
A 		5.5
(-2.3)
A 		1.9
(-3)
A 		32.1
(3)
A 		23.5
(1.3)
A 		30
B 18.7
(0.9)
A 		1.7
(-3)
A 		26.3
(2.7)
A 		27.6
(3)
A 		19.7
(1.2)
A 		5.9
(-2)
A 		26
C 3.7
(-2.6)
A 		29.8
(1.6)
A 		11.9
(-1.3)
A 		38.6
(3)
A 		1
(-3)
A 		22
(0.4)
A 		38
avr 9.3
(-3) 		16
(0) 		14.6
(-0.6) 		22.7
(3) 		17.6
(0.7) 		17.1
(0.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.9
(-3)
A 		1.1
(-2.8)
A 		1.5
(-2.5)
A 		8.3
(3)
A 		7
B 3.6
(-1)
A 		9.6
(3)
A 		0.6
(-3)
A 		5.2
(0.1)
A 		9
C 3.2
(-0.1)
A 		4.1
(1.3)
A 		1.3
(-3)
A 		5.2
(3)
A 		4
avr 2.6
(-1.2) 		4.9
(1.5) 		1.1
(-3) 		6.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1
(-2.7)
A 		5.8
(0.5)
A 		1.2
(-2.5)
A 		0.5
(-3)
A 		9.7
(3)
A 		5.7
(0.4)
A 		9
B 6.5
(1.8)
A 		0.6
(-3)
A 		6.4
(1.7)
A 		7.3
(2.4)
A 		8
(3)
A 		2.2
(-1.7)
A 		7
C 1.4
(-2.3)
A 		9.1
(3)
A 		3
(-1.2)
A 		7.8
(2.1)
A 		0.3
(-3)
A 		7.4
(1.8)
A 		9
avr 3
(-3) 		5.2
(1.4) 		3.5
(-2) 		5.2
(1.4) 		6
(3) 		5.1
(1.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12508
Sequence Type Exemplar sequence
Representative Public ID T15B7.10 NCBI
Target Description T15B7.10 /REP_DB=WormBase Gene ID /WP=CE13664 /TR=O17027 /GB=AAB69971.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072326 NCBI Caenorhabditis elegans T15B7.10 (T15B7.10) mRNA, complete cds. 11/11 None
GENEFINDER00000035403 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6813385:6816257:1 9/11 None
T15B7.10 ENSEMBL cdna:known chromosome:CEL140:V:6813220:6814263:1 gene:T15B7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6813220-6814264(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.10
Entrez Gene 188520 Entrez gene
SwissProt O17027 EMBL-EBI
WormBase CE13664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 1.0E-163
blast AAF39844 Hypothetical protein F56A4.6 [Caenorhabditis elegans] ref|NP_503670.2| F56A4.6 [Caenorhabditis elegans] 1.0E-161
blast AAD32270 Hypothetical protein F02C9.2 [Caenorhabditis elegans] ref|NP_503859.2| F02C9.2 [Caenorhabditis elegans] 1.0E-149
blast AAB69971 Hypothetical protein T15B7.10 [Caenorhabditis elegans] ref|NP_504727.1| T15B7.10 [Caenorhabditis elegans] 1.0E-129
blast AAB69974 Hypothetical protein T15B7.8 [Caenorhabditis elegans] ref|NP_504731.1| T15B7.8 [Caenorhabditis elegans] 1.0E-56
blast NP_503697 Y45G12C.11 [Caenorhabditis elegans] gb|AAF60585.2| Hypothetical protein Y45G12C.11 [Caenorhabditis elegans] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 9.0E-93
Pfam IPR005049 EMBL-EBI Protein of unknown function DUF288 2.4E-100
Sequence
Target Sequence 
>C. ELEGANS:185276_AT
aaagttctcattctaaaatcagcagagcaagcgaaagcaaatactcagaaatcctatcaa
gaaaataattttacaatttttgtacagacctcacatcctccaggcttgctagttccgggc
agtgacaagattacagaaaaatctcgatcaaaattcgcgatcgatccagtgtctaaaatt
aaagcgggaaataaatggatcgtcgtcacaactattagtttgccaacggaagatgtcaag
gtaatttttcatccccccaattacagaggaagaccagtcaagctttttgtcgcaatttct
atgttgtatgatctcaacgcaaaaattgtgcacagacttgcatcatttgtggattggaac
ttggtagtggttgcagatatcaaaactccgctagattggaaactggaaaacgttcacttc
ttgtctgtgcaatttcaaaagcaactgcctttttccctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTCTCATTCTAAAATCAGCAG 262 123 91 Antisense
AATTTTTGTACAGACCTCACATCCT 281 175 165 Antisense
GCTTGCTAGTTCCGGGCAGTGACAA 124 307 194 Antisense
ATTCGCGATCGATCCAGTGTCTAAA 430 9 243 Antisense
ATGGATCGTCGTCACAACTATTAGT 552 51 285 Antisense
TTTTCATCCCCCCAATTACAGAGGA 22 673 336 Antisense
GAAGACCAGTCAAGCTTTTTGTCGC 306 337 359 Antisense
GCTTTTTGTCGCAATTTCTATGTTG 116 305 372 Antisense
AATTGTGCACAGACTTGCATCATTT 252 179 414 Antisense
GGTTGCAGATATCAAAACTCCGCTA 242 507 459 Antisense
CAAAAGCAACTGCCTTTTTCCCTGG 51 191 526 Antisense
Sequence Source Affymetrix Proprietary Database