[Home] | [Total List]

[185274_s_at]

Description C40A11.6 /REP_DB=WormBase Gene ID /WP=CE27840 /TR=Q9TZA8 /GB=AAC68757.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 19      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 48.9
(0.7)
A 		25.8
(-1.3)
A 		7.4
(-3)
A 		74.2
(3)
A 		67
B 7.1
(-3)
A 		39
(0.7)
A 		26.6
(-0.7)
A 		58.7
(3)
A 		52
C 48
(-1)
A 		64.4
(-0)
A 		11
(-3)
A 		119.5
(3)
P 		109
avr 34.7
(-1.3) 		43.1
(-0.6) 		15
(-3) 		84.1
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 67.3
(-0.3)
A 		69.1
(-0.2)
A 		46
(-2.1)
A 		34.8
(-3)
A 		39.9
(-2.6)
A 		108.2
(3)
P 		73
B 51.3
(3)
A 		23.3
(-0.9)
A 		9.9
(-2.7)
A 		9.7
(-2.8)
A 		7.9
(-3)
A 		39.7
(1.4)
A 		43
C 37
(-1.8)
A 		77.4
(3)
A 		26.6
(-3)
A 		31.6
(-2.4)
A 		40.8
(-1.3)
A 		68.3
(1.9)
P 		51
avr 51.9
(0.4) 		56.6
(1) 		27.5
(-2.7) 		25.4
(-3) 		29.5
(-2.5) 		72.1
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 17.8
(3)
A 		5.6
(-1.6)
A 		1.9
(-3)
A 		10.9
(0.4)
A 		16
B 2.3
(-3)
A 		9.6
(1.3)
A 		6.2
(-0.7)
A 		12.5
(3)
A 		10
C 15.9
(1.4)
A 		18.5
(2.4)
A 		3.8
(-3)
A 		20.2
(3)
P 		16
avr 12
(1.6) 		11.2
(1.1) 		4
(-3) 		14.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.4
(-1.8)
A 		24.6
(2.4)
A 		10
(-2.6)
A 		8.8
(-3)
A 		12
(-1.9)
A 		26.3
(3)
P 		18
B 17.8
(3)
A 		7.8
(-0.9)
A 		2.4
(-3)
A 		2.6
(-2.9)
A 		3.2
(-2.7)
A 		14.8
(1.8)
A 		15
C 13.7
(-0.5)
A 		23.6
(3)
A 		6.8
(-2.9)
A 		6.4
(-3)
A 		13.2
(-0.6)
A 		22.9
(2.8)
P 		17
avr 14.6
(0.4) 		18.7
(2) 		6.4
(-2.8) 		5.9
(-3) 		9.5
(-1.6) 		21.3
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185274_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5744
Sequence Type Exemplar sequence
Representative Public ID C40A11.6 NCBI
Target Description C40A11.6 /REP_DB=WormBase Gene ID /WP=CE27840 /TR=Q9TZA8 /GB=AAC68757.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061796(11), NM_061798(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061796 NCBI Caenorhabditis elegans C40A11.6 (C40A11.6) mRNA, complete cds. 11/11 None
NM_061798 NCBI Caenorhabditis elegans C40A11.7 (C40A11.7) mRNA, complete cds. 11/11 A 
SNAP00000005078 ENSEMBL cdna:SNAP chromosome:CEL140:II:2143511:2145583:-1 11/11 None
SNAP00000005080 ENSEMBL cdna:SNAP chromosome:CEL140:II:2146107:2150311:-1 11/11 None
GENEFINDER00000005087 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2144842:2145583:-1 11/11 None
C40A11.6 ENSEMBL cdna:known chromosome:CEL140:II:2144359:2145583:-1 gene:C40A11.6 11/11 A 
C40A11.7 ENSEMBL cdna:known chromosome:CEL140:II:2148807:2150311:-1 gene:C40A11.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005092 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2144840-2145582(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl C40A11.6
C40A11.7
Entrez Gene 173572 Entrez gene
183355 Entrez gene
SwissProt Q9TZA8 EMBL-EBI
Q9TZA6 EMBL-EBI
WormBase CE27840 Wormbase
CE19370 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
8076 voltage-gated potassium channel complex inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5249 voltage-gated potassium channel activity inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 1.0E-118
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 1.0E-118
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 1.0E-114
blast AAC68762 Hypothetical protein C40A11.7 [Caenorhabditis elegans] ref|NP_494199.1| C40A11.7 [Caenorhabditis elegans] 5.0E-85
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 5.0E-85
blast AAC68757 Hypothetical protein C40A11.6 [Caenorhabditis elegans] ref|NP_494197.1| C40A11.6 [Caenorhabditis elegans] 4.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.3E-43
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.4E-43
Sequence
Target Sequence 
>C. ELEGANS:185274_S_AT
gtcaagttgaatgtcggcggatctgtattcgagacgtggaaatcgacactgaccaagcag
gatggattcttcaaaacattaattgagactaatgttccggttaaaaaggacacttccgat
tgttatttcattgatcgctctccaaagtactttgaaactgtgctaaactacatgagatcc
ggtgttacagtacttccagactctgaaaaagaactacaagaactgaaaaaagaagccgaa
ttctacttgttggagcatttggtagacttgtgtgaacctataaaaaacaaaatcagaact
tatggctcgtctcatgaattgctgcaaatcatcgccagcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGTTGAATGTCGGCGGATCTG 310 461 34 Antisense
GGCGGATCTGTATTCGAGACGTGGA 490 541 49 Antisense
GAGACGTGGAAATCGACACTGACCA 670 393 64 Antisense
AGGACACTTCCGATTGTTATTTCAT 694 53 140 Antisense
GTTATTTCATTGATCGCTCTCCAAA 339 447 155 Antisense
TTGATCGCTCTCCAAAGTACTTTGA 622 699 164 Antisense
GAGATCCGGTGTTACAGTACTTCCA 301 395 207 Antisense
GTTACAGTACTTCCAGACTCTGAAA 94 447 217 Antisense
GAAGCCGAATTCTACTTGTTGGAGC 269 345 265 Antisense
GCTCGTCTCATGAATTGCTGCAAAT 608 299 338 Antisense
TGCTGCAAATCATCGCCAGCACCAA 661 581 353 Antisense
Sequence Source Affymetrix Proprietary Database