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[185273_at]

Description E02C12.7 /REP_DB=WormBase Gene ID /WP=CE04316 /TR=Q19031 /GB=AAA83464.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 30.5
(-1.1)
A 		56.7
(3)
A 		18.1
(-3)
A 		23.1
(-2.2)
A 		39
B 52
(3)
A 		39.8
(1.4)
A 		7.3
(-2.8)
A 		5.6
(-3)
A 		46
C 42.3
(2.3)
A 		44.5
(3)
P 		25.5
(-3)
A 		40.3
(1.7)
A 		19
avr 41.6
(1.9) 		47
(3) 		17
(-3) 		23
(-1.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 23.7
(-1.2)
A 		28.1
(-0.9)
A 		41.6
(0.2)
A 		75
(3)
M 		26.1
(-1)
A 		2.3
(-3)
A 		73
B 32.2
(-1)
A 		54.5
(0.5)
A 		90.4
(3)
A 		22.5
(-1.7)
A 		3.5
(-3)
A 		8.1
(-2.7)
A 		87
C 12.8
(-2.4)
A 		20.3
(-1.5)
A 		8.4
(-2.9)
A 		59.9
(3)
A 		19.8
(-1.6)
A 		7.2
(-3)
A 		53
avr 22.9
(-0.8) 		34.3
(0.7) 		46.8
(2.3) 		52.5
(3) 		16.5
(-1.6) 		5.9
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.1
(2.2)
A 		12.3
(3)
A 		4.7
(-2.1)
A 		3.4
(-3)
A 		9
B 16.6
(3)
A 		9.8
(0.4)
A 		1.7
(-2.8)
A 		1.2
(-3)
A 		15
C 14
(3)
A 		12.8
(2)
P 		8.9
(-1.3)
A 		6.8
(-3)
A 		7
avr 13.9
(3) 		11.6
(1.6) 		5.1
(-2.2) 		3.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.4
(-1.8)
A 		10
(0.1)
A 		9.1
(-0.2)
A 		19
(3)
M 		7.9
(-0.6)
A 		0.6
(-3)
A 		18
B 11.2
(-0.1)
A 		18.1
(1.9)
A 		22
(3)
A 		6
(-1.7)
A 		1.4
(-3)
A 		3
(-2.5)
A 		21
C 4.7
(-1.4)
A 		6.2
(-0.5)
A 		2.1
(-3)
A 		12.1
(3)
A 		6.4
(-0.4)
A 		2.4
(-2.8)
A 		10
avr 6.8
(-0.2) 		11.4
(2.4) 		11.1
(2.3) 		12.4
(3) 		5.2
(-1.2) 		2
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11412
Sequence Type Exemplar sequence
Representative Public ID E02C12.7 NCBI
Target Description E02C12.7 /REP_DB=WormBase Gene ID /WP=CE04316 /TR=Q19031 /GB=AAA83464.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073026(10), NM_001028591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073026 NCBI Caenorhabditis elegans E02C12.8a (E02C12.8) mRNA, complete cds. 10/11 A 
NM_001028591 NCBI Caenorhabditis elegans E02C12.8c (E02C12.8) mRNA, complete cds. 11/11 None
SNAP00000032006 ENSEMBL cdna:SNAP chromosome:CEL140:V:9374246:9375106:-1 11/11 None
GENEFINDER00000032017 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9374246:9376134:-1 11/11 None
E02C12.8a ENSEMBL cdna:known chromosome:CEL140:V:9374224:9376142:-1 gene:E02C12.8 10/11 A 
E02C12.8c ENSEMBL cdna:known chromosome:CEL140:V:9374246:9376134:-1 gene:E02C12.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179320 3 2 NM_001028591 185142_at (11), 185273_at (11)
NM_073026 185142_at (11), 185273_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9374245-9375145(-) 100.0 100.0
Public Domain and Genome References
Ensembl E02C12.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN84829 Hypothetical protein E02C12.8a [Caenorhabditis elegans] ref|NP_505427.2| E02C12.8a [Caenorhabditis elegans] 0.0
blast AAP68946 Hypothetical protein E02C12.8c [Caenorhabditis elegans] ref|NP_001023762.1| E02C12.8c [Caenorhabditis elegans] 0.0
blast AAP68946 Hypothetical protein E02C12.8c [Caenorhabditis elegans] ref|NP_001023762.1| E02C12.8c [Caenorhabditis elegans] 1.0E-150
blast AAA83463 Hypothetical protein E02C12.6 [Caenorhabditis elegans] ref|NP_505426.2| E02C12.6 [Caenorhabditis elegans] 1.0E-145
Sequence
Target Sequence 
>C. ELEGANS:185273_AT
aattcgatacacttcggactacatttgaagaaacggaaaatcaagaaaaagttgaaaagc
taattacagtttttgaacactataagtcattggtgaaaaagtatacaaacatttccgata
ttttgggtgttaaacttgtactcaatcatggagacttgtcgcaaccaaacgtactttttt
cactggatccacagaataaactgaaattagaagcaattattgactggcagtgtgtttcta
gaatgcctcctggtctggatactgctagattattgttaggatgtctatccggacaggagc
gccgtgaacgaggaactgaacttttgaaggtgtatcatgaaacatataccagcgtatttg
gtgaagaattattcacgtttcaagaacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCGATACACTTCGGACTACATT 304 177 221 Antisense
GGGTGTTAAACTTGTACTCAATCAT 318 497 345 Antisense
GAGACTTGTCGCAACCAAACGTACT 549 393 371 Antisense
CGTACTTTTTTCACTGGATCCACAG 537 245 390 Antisense
TTGACTGGCAGTGTGTTTCTAGAAT 13 705 440 Antisense
TTCTAGAATGCCTCCTGGTCTGGAT 167 687 456 Antisense
CCTCCTGGTCTGGATACTGCTAGAT 461 267 466 Antisense
GGATGTCTATCCGGACAGGAGCGCC 76 515 499 Antisense
GGAGCGCCGTGAACGAGGAACTGAA 486 519 516 Antisense
ATCATGAAACATATACCAGCGTATT 626 29 554 Antisense
GAATTATTCACGTTTCAAGAACTTC 426 325 586 Antisense
Sequence Source Affymetrix Proprietary Database