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[185271_at]

Description K12D9.11 /REP_DB=WormBase Gene ID /WP=CE12200 /TR=P91386 /GB=AAG24168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 59      6grp_cgc > 96      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 36.3
(3)
A 		22.8
(0.6)
A 		18.4
(-0.2)
A 		2.3
(-3)
A 		34
B 6.4
(-3)
A 		9.6
(2.8)
A 		9.7
(3)
A 		8.4
(0.6)
A 		3
C 18.6
(-2.3)
A 		31.6
(0.2)
A 		46.9
(3)
A 		14.6
(-3)
A 		32
avr 20.4
(1.3) 		21.3
(1.7) 		25
(3) 		8.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 48.3
(3)
A 		4.7
(-3)
A 		5
(-3)
A 		18.8
(-1.1)
A 		42.3
(2.2)
A 		5.4
(-2.9)
A 		44
B 20.9
(-2.2)
A 		38.8
(1.1)
A 		45.7
(2.3)
A 		35.8
(0.5)
A 		49.6
(3)
A 		16.2
(-3)
A 		33
C 30
(-1.4)
A 		37.7
(-0.9)
A 		27.3
(-1.6)
A 		89.5
(3)
A 		11.6
(-2.8)
A 		9.2
(-3)
A 		80
avr 33.1
(0.6) 		27.1
(-0.3) 		26
(-0.5) 		48
(3) 		34.5
(0.9) 		10.3
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.2
(3)
A 		4.9
(-0.9)
A 		4.8
(-0.9)
A 		0.3
(-3)
A 		13
B 2
(-1)
A 		2.4
(3)
A 		2.3
(2)
A 		1.8
(-3)
A 		1
C 6.1
(-1.4)
A 		9.1
(-0.2)
A 		16.4
(3)
A 		2.5
(-3)
A 		14
avr 7.1
(2.3) 		5.5
(0.8) 		7.8
(3) 		1.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 8.9
(1)
A 		1.7
(-2.7)
A 		1.1
(-3)
A 		4.8
(-1.1)
A 		12.8
(3)
A 		1.3
(-2.9)
A 		12
B 7.3
(-2.4)
A 		12.9
(-0.1)
A 		11.1
(-0.8)
A 		9.5
(-1.5)
A 		20.1
(3)
A 		6
(-3)
A 		14
C 11.1
(0.2)
A 		11.5
(0.4)
A 		7
(-1.4)
A 		18
(3)
A 		3.7
(-2.8)
A 		3.1
(-3)
A 		15
avr 9.1
(0.9) 		8.7
(0.6) 		6.4
(-1) 		10.8
(2) 		12.2
(3) 		3.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15378
Sequence Type Exemplar sequence
Representative Public ID K12D9.11 NCBI
Target Description K12D9.11 /REP_DB=WormBase Gene ID /WP=CE12200 /TR=P91386 /GB=AAG24168.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K12D9.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:3010764:3012175:-1 gene:K12D9.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3011662-3013677(-) 100.0 100.0
Public Domain and Genome References
Ensembl K12D9.11
Sequence
Target Sequence 
>C. ELEGANS:185271_AT
ttttgcaaactcacattgtcagacaattctctataaaatcttctatcaatgtgataatgg
cttcagtcgcatttttcgacatttgcacctttcaattccagttaaaacaagtcattatgc
atctcgcaatgggcaataacccatgttttgaaaagttttcatattggattactgtacttg
acaagtattgttatgtagcaaaggactattcgagaagatgctccacgtggctttgcttct
caattgcccttgttcgaactttgatcataaagtatccaatgaactcaaagtacaaaaaac
taggaaatgctgaggctgcaattcttgtaatatgtggaatctcaattttgagccttccat
tgtcaattattcaaatatttgagaataagctattagaagttgatcagcctaccacgtgcc
atccaactggagaattgacatattttattgtagcttcggaatattttctcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGCAAACTCACATTGTCAGACA 710 677 338 Antisense
TAATGGCTTCAGTCGCATTTTTCGA 219 635 392 Antisense
CATTTTTCGACATTTGCACCTTTCA 251 215 407 Antisense
TGCACCTTTCAATTCCAGTTAAAAC 256 575 421 Antisense
GTCATTATGCATCTCGCAATGGGCA 380 467 448 Antisense
TTCTCAATTGCCCTTGTTCGAACTT 274 689 574 Antisense
GAAATGCTGAGGCTGCAATTCTTGT 650 359 641 Antisense
AATTTTGAGCCTTCCATTGTCAATT 548 175 681 Antisense
TAGAAGTTGATCAGCCTACCACGTG 280 651 731 Antisense
ACCACGTGCCATCCAACTGGAGAAT 283 85 748 Antisense
GTAGCTTCGGAATATTTTCTCAAAA 243 457 787 Antisense
Sequence Source Affymetrix Proprietary Database