[Home] | [Total List]

[185270_at]

Description F53E10.4 /REP_DB=WormBase Gene ID /WP=CE10926 /TR=P91316 /GB=AAB42290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 01      4grp_high_8_8 > 49      6grp_highest_nonorm > 61      6grp_total > 33      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1140
1 2 3 4 range
A 1192.7
(3)
P 		506.6
(-0.9)
P 		567.2
(-0.5)
P 		132.4
(-3)
P 		1060
B 969.4
(3)
P 		582.7
(0.5)
P 		511.2
(0)
P 		52.3
(-3)
A 		917
C 1013.5
(3)
P 		483.2
(-0.5)
P 		448.3
(-0.7)
P 		105.8
(-3)
P 		908
avr 1058.5
(3) 		524.2
(-0.3) 		508.9
(-0.4) 		96.8
(-3) 		962

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 632.3
(3)
P 		443.7
(0.6)
P 		604.9
(2.7)
P 		471.8
(1)
P 		348
(-0.6)
P 		161
(-3)
P 		471
B 583.7
(3)
P 		379.3
(0.4)
P 		507.2
(2)
P 		415.2
(0.8)
P 		371.6
(0.3)
P 		120.6
(-3)
P 		463
C 711.2
(3)
P 		429.7
(-0)
P 		585.1
(1.7)
P 		374.5
(-0.6)
P 		397.6
(-0.3)
P 		149.2
(-3)
P 		562
avr 642.4
(3) 		417.6
(0.3) 		565.7
(2.1) 		420.5
(0.3) 		372.4
(-0.2) 		143.6
(-3) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 423
1 2 3 4 range
A 434.3
(3)
P 		110
(-1.7)
P 		148.3
(-1.1)
P 		19.4
(-3)
P 		415
B 309.1
(3)
P 		143.9
(-0.3)
P 		118.5
(-0.8)
P 		11.2
(-3)
A 		298
C 335.5
(3)
P 		138.9
(-0.7)
P 		156.2
(-0.4)
P 		17.8
(-3)
P 		318
avr 359.6
(3) 		130.9
(-1) 		141
(-0.8) 		16.1
(-3) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 116.6
(0.9)
P 		157.8
(3)
P 		131.7
(1.7)
P 		119.7
(1.1)
P 		105
(0.3)
P 		39.2
(-3)
P 		119
B 203.1
(3)
P 		126.2
(0.1)
P 		123.2
(-0)
P 		110
(-0.5)
P 		151
(1)
P 		45
(-3)
P 		158
C 263.6
(3)
P 		131.1
(-0.7)
P 		148.9
(-0.2)
P 		75.3
(-2.3)
P 		128.7
(-0.8)
P 		49.9
(-3)
P 		214
avr 194.4
(3) 		138.4
(0.8) 		134.6
(0.6) 		101.7
(-0.7) 		128.2
(0.3) 		44.7
(-3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14796
Sequence Type Exemplar sequence
Representative Public ID F53E10.4 NCBI
Target Description F53E10.4 /REP_DB=WormBase Gene ID /WP=CE10926 /TR=P91316 /GB=AAB42290.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071310 NCBI Caenorhabditis elegans F53E10.4 (F53E10.4) mRNA, complete cds. 11/11 None
SNAP00000043460 ENSEMBL cdna:SNAP chromosome:CEL140:V:2592421:2594839:1 11/11 None
GENEFINDER00000043470 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2592421:2594839:1 11/11 None
F53E10.4 ENSEMBL cdna:known chromosome:CEL140:V:2592400:2594839:1 gene:F53E10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043462 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2592420-2594839(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53E10.4
Entrez Gene 178726 Entrez gene
SwissProt P91316 EMBL-EBI
WormBase CE10926 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42290 Hypothetical protein F53E10.4 [Caenorhabditis elegans] ref|NP_503711.1| F53E10.4 [Caenorhabditis elegans] 1.0E-132
blast CAE62513 Hypothetical protein CBG06618 [Caenorhabditis briggsae] 1.0E-113
Sequence
Target Sequence 
>C. ELEGANS:185270_AT
tgaatattggtccttccactttgccagaagagaccttttggatgccgatggccttcatat
tcagccttatgtgtgccaactcgggaacgcgttgagcaactgtttggctccgtactcctg
catgggaccaaacgcctacatgcaaatgaacgccgccaacaccaccgaggccaccgacta
ctggatcgacttggccgtgacagagtaccagtgtggagtcggatataatttgaccatgac
cgagttctactgtatggctttctgccgtgatcgttatcagccgaatatcgatcaatgtga
tgctcaggcggcaatcgacatgaagaatggaatggatccttgcgctgcccaacaaaagga
cttcaactgtcaggcggccgtctaccgcaactgctgtgactggaacgccggtgtctacat
ttgtaacgtggatgtcgccgggtcgaaggcagtgaatccagcgtgtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATATTGGTCCTTCCACTTTGCC 136 573 171 Antisense
TGCCGATGGCCTTCATATTCAGCCT 596 585 213 Antisense
ATTCAGCCTTATGTGTGCCAACTCG 473 11 229 Antisense
ACTGGATCGACTTGGCCGTGACAGA 359 97 350 Antisense
GAGTTCTACTGTATGGCTTTCTGCC 51 399 412 Antisense
TTCTGCCGTGATCGTTATCAGCCGA 180 693 430 Antisense
GTGATGCTCAGGCGGCAATCGACAT 10 485 467 Antisense
GAATGGAATGGATCCTTGCGCTGCC 300 333 495 Antisense
TACCGCAACTGCTGTGACTGGAACG 233 649 553 Antisense
GAACGCCGGTGTCTACATTTGTAAC 449 347 573 Antisense
GAAGGCAGTGAATCCAGCGTGTGTG 537 333 615 Antisense
Sequence Source Affymetrix Proprietary Database