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[185269_at]

Description F55A12.2 /REP_DB=WormBase Gene ID /WP=CE11119 /TR=O01760 /GB=AAB54128.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 74      6grp_total > 50      4grp_total > 51      6grp_highest_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 695.1
(-1.7)
P 		829.2
(3)
P 		719.7
(-0.8)
P 		656.7
(-3)
P 		173
B 682.2
(0.7)
P 		747.6
(3)
P 		685.3
(0.8)
P 		577.1
(-3)
P 		171
C 671.2
(0.4)
P 		724.3
(3)
P 		621
(-2.1)
P 		603.8
(-3)
P 		121
avr 682.8
(-0.3) 		767
(3) 		675.3
(-0.6) 		612.5
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 815.5
(3)
P 		564.7
(-3)
P 		681.7
(-0.2)
P 		713.6
(0.6)
P 		673.6
(-0.4)
P 		610.7
(-1.9)
P 		251
B 696.4
(0.8)
P 		730.9
(1.8)
P 		649.3
(-0.6)
P 		773.8
(3)
P 		565.3
(-3)
P 		649.9
(-0.6)
P 		209
C 631.2
(-0.8)
P 		738.5
(1)
P 		741.8
(1.1)
P 		860.4
(3)
P 		494
(-3)
P 		572.6
(-1.7)
P 		366
avr 714.4
(1) 		678
(-0.1) 		690.9
(0.3) 		782.6
(3) 		577.6
(-3) 		611.1
(-2) 		205
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 253.1
(3)
P 		180
(0.2)
P 		188.1
(0.5)
P 		96.1
(-3)
P 		157
B 217.6
(3)
P 		184.7
(0.9)
P 		158.8
(-0.7)
P 		123
(-3)
P 		95
C 222.2
(3)
P 		208.3
(2.3)
P 		216.4
(2.7)
P 		101.8
(-3)
P 		120
avr 231
(3) 		191
(1.1) 		187.8
(0.9) 		107
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 150.3
(-2.8)
P 		200.9
(2.7)
P 		148.5
(-3)
P 		181
(0.6)
P 		203.3
(3)
P 		148.7
(-3)
P 		55
B 242.3
(2.9)
P 		243.3
(3)
P 		157.7
(-3)
P 		205
(0.3)
P 		229.7
(2)
P 		242.4
(2.9)
P 		86
C 234
(3)
P 		225.3
(2.3)
P 		188.8
(-0.7)
P 		173
(-1.9)
P 		159.8
(-3)
P 		191.7
(-0.4)
P 		74
avr 208.9
(1.5) 		223.2
(3) 		165
(-3) 		186.3
(-0.8) 		197.6
(0.4) 		194.3
(0) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1927
Sequence Type Exemplar sequence
Representative Public ID F55A12.2 NCBI
Target Description F55A12.2 /REP_DB=WormBase Gene ID /WP=CE11119 /TR=O01760 /GB=AAB54128.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026323(11), NM_170864(11), NM_170863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026323 NCBI Caenorhabditis elegans F55A12.2c (F55A12.2) mRNA, complete cds. 11/11 None
NM_170864 NCBI Caenorhabditis elegans F55A12.2a (F55A12.2) mRNA, complete cds. 11/11 None
NM_170863 NCBI Caenorhabditis elegans F55A12.2b (F55A12.2) mRNA, complete cds. 11/11 None
SNAP00000029046 ENSEMBL cdna:SNAP chromosome:CEL140:I:5365268:5366790:1 11/11 None
GENEFINDER00000029055 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5365268:5366790:1 11/11 None
F55A12.2c ENSEMBL cdna:known chromosome:CEL140:I:5365268:5366833:1 gene:F55A12.2 11/11 None
F55A12.2a ENSEMBL cdna:known chromosome:CEL140:I:5365886:5366844:1 gene:F55A12.2 11/11 None
F55A12.2b ENSEMBL cdna:known chromosome:CEL140:I:5365886:5366790:1 gene:F55A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172185 4 3 NM_001026323 185269_at (11)
NM_170863 185269_at (11)
NM_170864 185269_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5365267-5366790(+) 100.0 100.0
Public Domain and Genome References
Ensembl F55A12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68939 Hypothetical protein F55A12.2c [Caenorhabditis elegans] ref|NP_001021494.1| F55A12.2c [Caenorhabditis elegans] 1.0E-173
blast AAP68939 Hypothetical protein F55A12.2c [Caenorhabditis elegans] ref|NP_001021494.1| F55A12.2c [Caenorhabditis elegans] 1.0E-170
blast AAM15579 Hypothetical protein F55A12.2b [Caenorhabditis elegans] ref|NP_740850.1| F55A12.2b [Caenorhabditis elegans] 1.0E-140
blast AAP68939 Hypothetical protein F55A12.2c [Caenorhabditis elegans] ref|NP_001021494.1| F55A12.2c [Caenorhabditis elegans] 1.0E-140
blast AAM15579 Hypothetical protein F55A12.2b [Caenorhabditis elegans] ref|NP_740850.1| F55A12.2b [Caenorhabditis elegans] 1.0E-139
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021494.1 2 162-184,228-250
NP_740851.1 2 73-92,112-134
NP_740850.1 2 105-127,171-193
F55A12.2c 2 162-184,228-250
F55A12.2a 2 73-92,112-134
F55A12.2b 2 105-127,171-193
SNAP00000029046 2 162-184,228-250
GENEFINDER00000029055 2 181-203,247-269
Sequence
Target Sequence 
>C. ELEGANS:185269_AT
cacttattgccactcggatcaactctgaaatgttcctttatgatgcgaaagctaaattct
ttgaatcaatccgaaagtgtccgaaatctccatttgtatttggagtttattcctctggtg
ttacatatttcatgcttcatcaggttcttgtaacacctaaagtctacaatgagcttacac
catgtccatcgtgtcttgtcattaatagtattgctattggattattaacaggaattgctc
ttccgatgcttgcaactccatatttggcacattatgttctgatcaatagggaagcgaata
caggaggaagttctagagcaatgccagttgtcaataatttattagagttcttgactctag
gatgggaaggctccaaacccgctcgtcctgtaattgccatgtgtgctgccattcaaatga
tcgtcagttttggttcaatgtacgcgatgctctggggtcgtgaacgaatgttcaacactc
ttgaactggactccgatttggcacgtcgtcttgttgctgaagcgcaaacatcatcctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTATTGCCACTCGGATCAACTC 222 197 365 Antisense
CGAAAGTGTCCGAAATCTCCATTTG 568 251 436 Antisense
TTCATGCTTCATCAGGTTCTTGTAA 156 689 493 Antisense
CAATGAGCTTACACCATGTCCATCG 17 183 531 Antisense
ATGTCCATCGTGTCTTGTCATTAAT 543 47 546 Antisense
GAATTGCTCTTCCGATGCTTGCAAC 60 325 596 Antisense
AGGATGGGAAGGCTCCAAACCCGCT 48 57 723 Antisense
GTAATTGCCATGTGTGCTGCCATTC 7 463 754 Antisense
TCAATGTACGCGATGCTCTGGGGTC 355 633 799 Antisense
AACACTCTTGAACTGGACTCCGATT 573 135 838 Antisense
GCTGAAGCGCAAACATCATCCTCAC 637 295 880 Antisense
Sequence Source Affymetrix Proprietary Database