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[185267_at]

Description H01M10.2 /REP_DB=WormBase Gene ID /WP=CE19913 /TR=Q9N5P4 /GB=AAF39863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 51
(-3)
A 		49.8
(-3)
A 		58.4
(-2.7)
A 		205.3
(3)
P 		156
B 68.8
(-2.3)
A 		73.6
(-1.8)
A 		63.3
(-3)
A 		113
(3)
A 		50
C 106.3
(0.6)
A 		19.9
(-3)
A 		24.2
(-2.8)
A 		162.2
(3)
P 		142
avr 75.4
(-1.5) 		47.8
(-3) 		48.6
(-3) 		160.2
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 95.1
(3)
A 		54.4
(0)
M 		75.1
(1.5)
A 		23.1
(-2.3)
A 		74.9
(1.5)
A 		13.1
(-3)
A 		82
B 69.6
(1.2)
A 		17.8
(-2.5)
A 		49.8
(-0.2)
A 		10.6
(-3)
A 		95.5
(3)
A 		94.2
(2.9)
A 		85
C 81.3
(-0.9)
A 		75
(-1.9)
A 		85.5
(-0.3)
A 		106.1
(3)
A 		73.3
(-2.2)
A 		68.3
(-3)
A 		38
avr 82
(3) 		49.1
(-2.6) 		70.1
(1) 		46.6
(-3) 		81.2
(2.9) 		58.5
(-1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 18.6
(-0.6)
A 		10.8
(-3)
A 		15.3
(-1.6)
A 		30
(3)
P 		19
B 21.9
(1.6)
A 		18.2
(-0.8)
A 		14.7
(-3)
A 		24.1
(3)
A 		9
C 35.2
(3)
A 		5.7
(-3)
A 		8.4
(-2.5)
A 		27.3
(1.4)
P 		30
avr 25.2
(2.3) 		11.6
(-3) 		12.8
(-2.5) 		27.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 17.5
(1.4)
A 		19.4
(2)
M 		16.3
(1.1)
A 		5.8
(-2.2)
A 		22.6
(3)
A 		3.2
(-3)
A 		19
B 24.2
(0.6)
A 		5.9
(-2.5)
A 		12.1
(-1.5)
A 		2.8
(-3)
A 		38.8
(3)
A 		35.1
(2.4)
A 		36
C 30.1
(3)
A 		22.9
(-1.9)
A 		21.7
(-2.7)
A 		21.3
(-3)
A 		23.7
(-1.4)
A 		22.9
(-1.9)
A 		9
avr 23.9
(1.5) 		16.1
(-1) 		16.7
(-0.8) 		10
(-3) 		28.4
(3) 		20.4
(0.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18254
Sequence Type Exemplar sequence
Representative Public ID H01M10.2 NCBI
Target Description H01M10.2 /REP_DB=WormBase Gene ID /WP=CE19913 /TR=Q9N5P4 /GB=AAF39863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076066 NCBI Caenorhabditis elegans H01M10.2 (H01M10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000030586 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2584533:2585620:-1 11/11 None
H01M10.2 ENSEMBL cdna:known chromosome:CEL140:X:2584533:2585733:-1 gene:H01M10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030584 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2584532-2585733(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H01M10.2
Entrez Gene 186664 Entrez gene
SwissProt Q9N5P4 EMBL-EBI
WormBase CE35729 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39863 Hypothetical protein H01M10.2 [Caenorhabditis elegans] ref|NP_508467.2| H01M10.2 [Caenorhabditis elegans] 1.0E-127
blast AAF39863 Hypothetical protein H01M10.2 [Caenorhabditis elegans] ref|NP_508467.2| H01M10.2 [Caenorhabditis elegans] 1.0E-115
blast CAE58854 Hypothetical protein CBG02079 [Caenorhabditis briggsae] 2.0E-89
blast CAE58854 Hypothetical protein CBG02079 [Caenorhabditis briggsae] 5.0E-85
Sequence
Target Sequence 
>C. ELEGANS:185267_AT
cactttctcagcctgcaacaactgcgccgttactcattaaagaggttttgcaaattaatt
ttttttcaaaaaaacctgtctacagatctttttcagcattaattcatgttttgcagttat
atttaaaacctgttgataacatagctctcaacatttcgttctcaccccccgttcactgga
cattctgcttccctagttgtggggttaacgatcaagctgttgatgaagatgacgcatatg
aaaaagccaaggatgatgttcttgacgcggtccaatcttcatgtgttaatgagggtgcca
aatgtgatattgattcagtagatcttcagtatcatcccgagtctgtcttaactgaggatt
tcggatcgtactatgacttgagcggcaatcgatacaaaataagtggaaaaacaataccgt
ataaaataaacaatattcatccaggaattatcaataattttgttttgccgatgaaaatca
ccttcaaattatcatccccaataccagaggcaacggcaaaaatgttgaaacaaaagatca
ttgactacctagccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTTCTCAGCCTGCAACAACTGC 259 197 284 Antisense
ACAACTGCGCCGTTACTCATTAAAG 391 111 301 Antisense
ATAGCTCTCAACATTTCGTTCTCAC 101 23 424 Antisense
ACATTCTGCTTCCCTAGTTGTGGGG 177 105 463 Antisense
TCTTGACGCGGTCCAATCTTCATGT 564 615 543 Antisense
AGATCTTCAGTATCATCCCGAGTCT 227 65 603 Antisense
TCATCCCGAGTCTGTCTTAACTGAG 277 619 615 Antisense
GGATCGTACTATGACTTGAGCGGCA 132 513 646 Antisense
AATCACCTTCAAATTATCATCCCCA 108 171 759 Antisense
ATCATCCCCAATACCAGAGGCAACG 487 29 774 Antisense
AAAGATCATTGACTACCTAGCCGCC 472 121 816 Antisense
Sequence Source Affymetrix Proprietary Database