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[185266_at]

Description F48G7.13 /REP_DB=WormBase Gene ID /WP=CE10778 /TR=O44583 /GB=AAG24127.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 3
(-3)
A 		8.4
(-2.4)
A 		9.9
(-2.3)
A 		61.7
(3)
A 		59
B 20.2
(-1.2)
A 		6.1
(-3)
A 		7.2
(-2.9)
A 		53.4
(3)
A 		47
C 6
(-2.8)
A 		2.7
(-3)
A 		4.8
(-2.9)
A 		89.9
(3)
P 		87
avr 9.7
(-2.6) 		5.7
(-3) 		7.3
(-2.8) 		68.3
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 37.9
(3)
A 		14.8
(-0.9)
A 		5.8
(-2.4)
A 		13.1
(-1.2)
A 		24.8
(0.8)
A 		2.1
(-3)
A 		36
B 2.7
(-3)
A 		4.5
(-2.7)
A 		15.1
(-1.2)
A 		44.8
(3)
A 		6.8
(-2.4)
A 		4.6
(-2.7)
A 		42
C 3.4
(-2.9)
A 		16
(0.4)
A 		13
(-0.4)
A 		2.9
(-3)
A 		3.6
(-2.8)
A 		26.1
(3)
A 		23
avr 14.7
(-0.6) 		11.8
(-2.4) 		11.3
(-2.7) 		20.3
(3) 		11.7
(-2.5) 		10.9
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.1
(-3)
A 		1.8
(-2.5)
A 		2.6
(-1.9)
A 		9
(3)
A 		8
B 6.5
(0)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		11.4
(3)
A 		10
C 2
(-2.5)
A 		0.8
(-3)
A 		1.7
(-2.6)
A 		15.2
(3)
P 		14
avr 3.2
(-2) 		1.4
(-3) 		2
(-2.7) 		11.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7
(2.6)
A 		5.3
(1.1)
A 		1.3
(-2.3)
A 		3.3
(-0.6)
A 		7.5
(3)
A 		0.5
(-3)
A 		7
B 0.9
(-3)
A 		1.5
(-2.7)
A 		3.7
(-1.5)
A 		11.9
(3)
A 		2.8
(-2)
A 		1.7
(-2.6)
A 		11
C 1.3
(-2.5)
A 		4.9
(0.2)
A 		3.3
(-1)
A 		0.6
(-3)
A 		1.2
(-2.6)
A 		8.7
(3)
A 		8
avr 3.1
(-2.3) 		3.9
(-0.4) 		2.8
(-3) 		5.3
(3) 		3.8
(-0.6) 		3.6
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15886
Sequence Type Exemplar sequence
Representative Public ID F48G7.13 NCBI
Target Description F48G7.13 /REP_DB=WormBase Gene ID /WP=CE10778 /TR=O44583 /GB=AAG24127.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070864(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070864 NCBI Caenorhabditis elegans F48G7.13 (F48G7.13) mRNA, complete cds. 11/11 None
F48G7.13 ENSEMBL cdna:known chromosome:CEL140:V:614857:616426:1 gene:F48G7.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:614856-616426(+) 94.75 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.13
Entrez Gene 186001 Entrez gene
SwissProt O44583 EMBL-EBI
WormBase CE10778 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24127 Hypothetical protein F48G7.13 [Caenorhabditis elegans] ref|NP_503265.1| F48G7.13 [Caenorhabditis elegans] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:185266_AT
ctcagccacattgctaggatttttcagcttacaagcttaaaaattcaagattttattatt
ttttgctctagcagagattttgataaaatccacgtattgatatctttaattgaaaaatct
gaaaactttctgaaagttaaaaatttgtactggagatgttgcccgcctgaaattgacgag
aaacattctgcaagagtttttatcaagtttttaaaactgtttgatgaaaactcgctgaaa
atgattcacaatgatatgctgcagtttccaccggaggaattgaatattttggctgaaact
agccaatggaaacgcgccagcacaatttctttggccaatggacaagttgaatcgattgag
ccatttcttcacaccacaaattgcacgtacaaaatgcaaaagttgtgcttcaattctcgg
aattcatcaaaatttttaaatttttctaaaactaaaataattaatttttttctccatttt
ctttttcaatttgttaaatttgaattgattccaaactcaaattttggggtttcttgtcaa
gaaatgtaccaatcgactcgaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAGCCACATTGCTAGGATTTTTC 130 229 202 Antisense
GCTAGGATTTTTCAGCTTACAAGCT 460 303 214 Antisense
TTTGTACTGGAGATGTTGCCCGCCT 268 667 345 Antisense
GTTGCCCGCCTGAAATTGACGAGAA 61 441 359 Antisense
ATGATATGCTGCAGTTTCCACCGGA 119 47 452 Antisense
CTAGCCAATGGAAACGCGCCAGCAC 422 225 500 Antisense
GCGCCAGCACAATTTCTTTGGCCAA 693 285 515 Antisense
GGACAAGTTGAATCGATTGAGCCAT 548 525 541 Antisense
TTTCTTCACACCACAAATTGCACGT 139 673 565 Antisense
AAGTTGTGCTTCAATTCTCGGAATT 532 155 601 Antisense
AGAAATGTACCAATCGACTCGAACT 554 71 741 Antisense
Sequence Source Affymetrix Proprietary Database