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[185265_at]

Description F11D11.10 /REP_DB=WormBase Gene ID /WP=CE15801 /TR=O62158 /GB=CAB04101.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 1.7
(-3)
A 		8.1
(-1.8)
A 		1.7
(-3)
A 		33.3
(3)
A 		32
B 1.7
(-3)
A 		4.1
(-1.2)
A 		3.8
(-1.4)
A 		9.7
(3)
A 		8
C 2.7
(-3)
A 		4.1
(-1.9)
A 		2.8
(-2.9)
A 		10.5
(3)
A 		8
avr 2
(-3) 		5.4
(-1.7) 		2.8
(-2.7) 		17.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 6.1
(3)
A 		3.6
(-0.9)
A 		2.5
(-2.7)
A 		4.8
(0.9)
A 		3.5
(-1.1)
A 		2.3
(-3)
A 		4
B 3.4
(2.3)
A 		2.7
(0)
A 		2.9
(0.7)
A 		3.6
(3)
A 		1.9
(-2.7)
A 		1.8
(-3)
A 		2
C 1.7
(-3)
A 		4.6
(1)
A 		5.1
(1.6)
A 		4.8
(1.2)
A 		4.9
(1.4)
A 		6.1
(3)
A 		4
avr 3.7
(-1.2) 		3.6
(-1.8) 		3.5
(-2.4) 		4.4
(3) 		3.4
(-3) 		3.4
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.9)
A 		1.8
(-1.2)
A 		0.5
(-3)
A 		4.9
(3)
A 		4
B 0.5
(-3)
A 		1
(-1.1)
A 		0.9
(-1.5)
A 		2.1
(3)
A 		2
C 0.9
(-3)
A 		1.2
(-1)
A 		1
(-2.3)
A 		1.8
(3)
A 		1
avr 0.7
(-3) 		1.3
(-1.4) 		0.8
(-2.7) 		2.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(1.5)
A 		1.3
(3)
A 		0.5
(-3)
A 		1.2
(2.3)
A 		1.1
(1.5)
A 		0.6
(-2.3)
A 		1
B 1.2
(3)
A 		0.9
(-0.6)
A 		0.7
(-3)
A 		0.9
(-0.6)
A 		0.8
(-1.8)
A 		0.7
(-3)
A 		1
C 0.6
(-3)
A 		1.4
(0.4)
A 		1.3
(0)
A 		1
(-1.3)
A 		1.6
(1.3)
A 		2
(3)
A 		1
avr 1
(0) 		1.2
(3) 		0.8
(-3) 		1
(0) 		1.2
(3) 		1.1
(1.5) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14757
Sequence Type Exemplar sequence
Representative Public ID F11D11.10 NCBI
Target Description F11D11.10 /REP_DB=WormBase Gene ID /WP=CE15801 /TR=O62158 /GB=CAB04101.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075255(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075255 NCBI Caenorhabditis elegans F11D11.10 (F11D11.10) mRNA, complete cds. 11/11 None
F11D11.10 ENSEMBL cdna:known chromosome:CEL140:V:18743546:18744188:1 gene:F11D11.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039952 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18743545-18744188(+) 26.29 100.0
Public Domain and Genome References
Gene Title
Ensembl F11D11.10
Entrez Gene 184357 Entrez gene
SwissProt O62158 EMBL-EBI
WormBase CE15801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04101 Hypothetical protein F11D11.10 [Caenorhabditis elegans] ref|NP_507656.1| F11D11.10 [Caenorhabditis elegans] 1.0E-84
blast AAK84591 Hypothetical protein Y22D7AL.2 [Caenorhabditis elegans] ref|NP_497433.1| Y22D7AL.2 [Caenorhabditis elegans] 5.0E-14
blast CAB04493 Hypothetical protein F56H6.3 [Caenorhabditis elegans] ref|NP_493104.1| F56H6.3 [Caenorhabditis elegans] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185265_AT
atctctacacccgacgaaactatattcatctccatcagttttccaggtccaggtatatcc
tgacgtgattgcaaaagtcaactttttatatgaatctggacactcgggctcccacgtggt
tgcgccttcgccggtctcagcggtcggagccccgaacgtgtcggccgcttccaaacaact
atctctccgcactacgttgcgctcacgccaaactacttatttcacgctaagctgcggaac
cccgaatgtgtcggccgcttccaaacaactatctctccccactacgttgcgcacacgcca
agctactcatttcacgctaagctgcggaaccccgaatgtgtcggccgctccaattaacta
cctttcgcactacgttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTACACCCGACGAAACTATAT 130 29 60 Antisense
ACCCGACGAAACTATATTCATCTCC 94 91 68 Antisense
ATTCATCTCCATCAGTTTTCCAGGT 20 13 83 Antisense
TCCATCAGTTTTCCAGGTCCAGGTA 570 591 90 Antisense
CAGTTTTCCAGGTCCAGGTATATCC 603 205 95 Antisense
CCAGGTCCAGGTATATCCTGACGTG 310 271 102 Antisense
AGGTATATCCTGACGTGATTGCAAA 534 57 110 Antisense
GACGTGATTGCAAAAGTCAACTTTT 79 377 121 Antisense
AAGTCAACTTTTTATATGAATCTGG 498 157 134 Antisense
ATATGAATCTGGACACTCGGGCTCC 407 19 147 Antisense
TAACTACCTTTCGCACTACGTTGCG 84 635 414 Antisense
Sequence Source Affymetrix Proprietary Database