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[185264_at] 7TM chemoreceptor, srb family

Description F58A6.11 /REP_DB=WormBase Gene ID /WP=CE07297 /TR=Q20963 /GB=AAA96203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 20      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6.3
(-3)
A 		21.1
(-0.9)
A 		25.7
(-0.3)
A 		49.5
(3)
A 		43
B 45.4
(3)
A 		22
(-2.7)
A 		31.4
(-0.4)
A 		20.6
(-3)
A 		25
C 41.3
(1.2)
A 		36.5
(0.6)
A 		6.7
(-3)
A 		55.9
(3)
A 		49
avr 31
(-0.2) 		26.5
(-1.5) 		21.3
(-3) 		42
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 41.2
(2.2)
A 		42.1
(2.4)
M 		45.3
(3)
P 		26.6
(-0.4)
A 		26
(-0.6)
A 		12.7
(-3)
A 		33
B 29.7
(0.8)
A 		21.4
(-1.4)
A 		32.5
(1.6)
A 		26
(-0.1)
A 		37.9
(3)
P 		15.2
(-3)
A 		23
C 37.7
(0.8)
P 		57.1
(3)
P 		43.6
(1.5)
A 		33.8
(0.4)
A 		3.6
(-3)
A 		14.4
(-1.8)
A 		54
avr 36.2
(2) 		40.2
(2.9) 		40.5
(3) 		28.8
(0.3) 		22.5
(-1.1) 		14.1
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.3
(-3)
A 		4.6
(-0.2)
A 		6.7
(2.3)
A 		7.3
(3)
A 		5
B 14.5
(3)
A 		5.4
(-2.4)
A 		7.3
(-1.3)
A 		4.4
(-3)
A 		10
C 13.7
(3)
A 		10.5
(1.3)
A 		2.3
(-3)
A 		9.4
(0.7)
A 		11
avr 10.2
(3) 		6.8
(-1.3) 		5.4
(-3) 		7
(-1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 7.6
(-0.7)
A 		15
(3)
M 		9.9
(0.4)
P 		6.7
(-1.2)
A 		7.8
(-0.6)
A 		3.1
(-3)
A 		12
B 10.3
(-0.2)
A 		7.1
(-2.1)
A 		7.9
(-1.6)
A 		6.9
(-2.3)
A 		15.4
(3)
P 		5.7
(-3)
A 		10
C 14
(1.7)
P 		17.4
(3)
P 		11.1
(0.7)
A 		6.8
(-0.9)
A 		1.2
(-3)
A 		4.8
(-1.7)
A 		16
avr 10.6
(1.2) 		13.2
(3) 		9.6
(0.5) 		6.8
(-1.4) 		8.1
(-0.5) 		4.5
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5807
Sequence Type Exemplar sequence
Representative Public ID F58A6.11 NCBI
Target Description F58A6.11 /REP_DB=WormBase Gene ID /WP=CE07297 /TR=Q20963 /GB=AAA96203.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062557(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062557 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-13) (srb-13) mRNA, complete cds. 11/11 None
SNAP00000019950 ENSEMBL cdna:SNAP chromosome:CEL140:II:5155417:5156215:-1 10/11 None
GENEFINDER00000019958 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5155417:5157064:-1 11/11 None
F58A6.11 ENSEMBL cdna:known chromosome:CEL140:II:5155417:5157606:-1 gene:F58A6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5155414-5157604(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-13
Ensembl F58A6.11
Entrez Gene 3565668 Entrez gene
SwissProt Q20963 EMBL-EBI
WormBase CE07297 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96203 Serpentine receptor, class b (beta) protein 13 [Caenorhabditis elegans] ref|NP_494958.1| Serpentine Receptor, class B (beta) family member (srb-13) [Caenorhabditis elegans] 0.0
blast AAA96203 Serpentine receptor, class b (beta) protein 13 [Caenorhabditis elegans] ref|NP_494958.1| Serpentine Receptor, class B (beta) family member (srb-13) [Caenorhabditis elegans] 1.0E-141
blast CAE59055 Hypothetical protein CBG02338 [Caenorhabditis briggsae] 1.0E-124
blast CAE59056 Hypothetical protein CBG02339 [Caenorhabditis briggsae] 1.0E-117
blast AAA96203 Serpentine receptor, class b (beta) protein 13 [Caenorhabditis elegans] ref|NP_494958.1| Serpentine Receptor, class B (beta) family member (srb-13) [Caenorhabditis elegans] 1.0E-109
blast CAE59055 Hypothetical protein CBG02338 [Caenorhabditis briggsae] 2.0E-92
blast CAE59056 Hypothetical protein CBG02339 [Caenorhabditis briggsae] 4.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.0E-126
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 3.4E-61
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 4.0E-26
Pfam IPR002184 EMBL-EBI Integral membrane protein Srb, nematode type 1.0E-126
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.7E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494958.1 7 26-48,61-83,103-122,142-164,188-210,242-264,279-301
F58A6.11 7 26-48,61-83,103-122,142-164,188-210,242-264,279-301
SNAP00000019950 4 26-48,58-80,101-123,138-160
GENEFINDER00000019958 5 140-159,179-201,225-247,279-301,316-338
Sequence
Target Sequence 
>C. ELEGANS:185264_AT
atattcgaactttgattggacccgttttagttatctttttgataattcccaattgtatta
tattctactttttattccaacacgaaacctatgatgatacattcatatcattcctcatgc
ttcctaatacaactgcagttaatttcaatacttatctttggtttctgttatatctcaaca
ttggaaatctcgcattaaacgttttacttttgttggtgcatcggaaatttaaaaggaggt
tattgcttcataaaacttcattgtctactcggtacgcaattgaggagatatcgcaatctt
caaagttcacactcatcatcacatttactcatttgctatttttcgggtgcaacacaatct
gcagtattctcgttcgagtactaggagaaccatttttcggctctttcatcaatcattcag
tcgctagaggagtcaattgcgcggttccaacctataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCGAACTTTGATTGGACCCGT 394 17 425 Antisense
CATTCATATCATTCCTCATGCTTCC 78 217 524 Antisense
TCCTCATGCTTCCTAATACAACTGC 119 593 536 Antisense
GTTTTACTTTTGTTGGTGCATCGGA 679 447 625 Antisense
AAACTTCATTGTCTACTCGGTACGC 425 73 677 Antisense
CAAAGTTCACACTCATCATCACATT 370 193 725 Antisense
TCATCACATTTACTCATTTGCTATT 237 621 740 Antisense
CAATCTGCAGTATTCTCGTTCGAGT 451 181 779 Antisense
TAGGAGAACCATTTTTCGGCTCTTT 241 653 806 Antisense
TTCGGCTCTTTCATCAATCATTCAG 376 695 820 Antisense
TCAATTGCGCGGTTCCAACCTATAA 607 633 857 Antisense
Sequence Source Affymetrix Proprietary Database