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[185263_at]

Description C35A11.1 /REP_DB=WormBase Gene ID /WP=CE27366 /TR=O16548 /GB=AAB66039.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 05      4grp_highest_8_8 > 55      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 197.8
(0.2)
P 		182.3
(-0.5)
P 		125.5
(-3)
P 		262.4
(3)
P 		137
B 270.1
(3)
P 		173
(-1)
P 		123.5
(-3)
P 		235.5
(1.6)
P 		147
C 214.6
(1.5)
P 		149
(-2.9)
P 		147.6
(-3)
P 		236.6
(3)
P 		89
avr 227.5
(2.1) 		168.1
(-1.1) 		132.2
(-3) 		244.8
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 219.5
(3)
P 		177.3
(1.2)
P 		163.7
(0.6)
P 		134
(-0.6)
P 		131
(-0.7)
P 		77.6
(-3)
P 		142
B 209.3
(3)
P 		168.9
(1.1)
P 		176.7
(1.5)
P 		139.2
(-0.3)
P 		126.2
(-0.9)
P 		82.4
(-3)
P 		127
C 188.8
(3)
P 		183.1
(2.6)
P 		105.7
(-2.9)
P 		150.3
(0.3)
P 		122.6
(-1.7)
P 		104.8
(-3)
P 		84
avr 205.9
(3) 		176.4
(1.5) 		148.7
(0.1) 		141.2
(-0.3) 		126.6
(-1) 		88.3
(-3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 72
(3)
P 		39.6
(-2)
P 		32.8
(-3)
P 		38.4
(-2.1)
P 		39
B 86.1
(3)
P 		42.7
(-1.5)
P 		28.6
(-3)
P 		50.2
(-0.7)
P 		58
C 71
(3)
P 		42.8
(-2.4)
P 		51.4
(-0.8)
P 		39.9
(-3)
P 		31
avr 76.4
(3) 		41.7
(-2.4) 		37.6
(-3) 		42.8
(-2.2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 40.5
(-0.1)
P 		63.1
(3)
P 		35.6
(-0.7)
P 		34
(-1)
P 		39.5
(-0.2)
P 		18.9
(-3)
P 		44
B 72.8
(3)
P 		56.2
(0.6)
P 		42.9
(-1.3)
P 		36.9
(-2.1)
P 		51.3
(-0.1)
P 		30.7
(-3)
P 		42
C 70
(3)
P 		55.9
(1)
P 		26.9
(-3)
P 		30.2
(-2.5)
P 		39.7
(-1.2)
P 		35.1
(-1.9)
P 		43
avr 61.1
(3) 		58.4
(2.5) 		35.1
(-1.7) 		33.7
(-2) 		43.5
(-0.2) 		28.2
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11449
Sequence Type Exemplar sequence
Representative Public ID C35A11.1 NCBI
Target Description C35A11.1 /REP_DB=WormBase Gene ID /WP=CE27366 /TR=O16548 /GB=AAB66039.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072030(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072030 NCBI Caenorhabditis elegans C35A11.1 (C35A11.1) mRNA, complete cds. 10/11 A 
C35A11.1 ENSEMBL cdna:known chromosome:CEL140:V:5405170:5408155:1 gene:C35A11.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5405181-5407595(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C35A11.1
Entrez Gene 178922 Entrez gene
SwissProt O16548 EMBL-EBI
WormBase CE37616 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628166_A_AT Dromyosuppressin receptor 2 dm
DROSOPHILA_2:1624049_AT Dromyosuppressin receptor 2 dm
DROSGENOME1:148037_AT Dromyosuppressin receptor 2 dm
DROSGENOME1:148036_AT Dromyosuppressin receptor 2 dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66039 Hypothetical protein C35A11.1 [Caenorhabditis elegans] ref|NP_504431.2| C35A11.1 [Caenorhabditis elegans] 0.0
blast CAE64634 Hypothetical protein CBG09395 [Caenorhabditis briggsae] 0.0
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 7.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504431.2 7 35-57,70-92,112-134,155-177,227-249,288-310,325-347
C35A11.1 7 35-57,70-92,112-134,155-177,227-249,288-310,325-347
Sequence
Target Sequence 
>C. ELEGANS:185263_AT
gttcgcatggaagttgtgcctgggaatctatatggtcgtatttgtactttgtattccaaa
tatgctggtccacgaaatcgcccgtgtagaaggaaatgactggcgacctggcaaaacgtg
tcaaaaatttgcatcgaactactctgaaccggtgtacacttttatggtcagccacgcggc
gactatcaacaattgccggttgtttaaatggaatatttggatgattggaattctgttcaa
ggttagcgagtacgcgagttatcaaattaaacgtcctaccagttttcagatcattccatg
tattctgctaattttcttgtctttcggccttgtatcaaagattagagacgcagaaaagca
tcggaggaaactaacgagtgttccgtcaaatgcatcaacagattcaaaaccattgaaaaa
gtatagtcaactctcaaagaacttttatgacaaaatggaaattttcagaaagaatggaac
atcagatagaaccacattgatgcttgttgttattttattggtatttttaataacggagtt
tccacaaggaatcatctcgattctttgcgcaatttttactacagacgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGCATGGAAGTTGTGCCTGGGA 699 441 474 Antisense
AATATGCTGGTCCACGAAATCGCCC 662 173 532 Antisense
GACTGGCGACCTGGCAAAACGTGTC 367 375 571 Antisense
TTGCATCGAACTACTCTGAACCGGT 529 701 602 Antisense
CGGTGTACACTTTTATGGTCAGCCA 77 243 623 Antisense
ACGTCCTACCAGTTTTCAGATCATT 669 91 744 Antisense
AGATCATTCCATGTATTCTGCTAAT 654 65 761 Antisense
TTCTGCTAATTTTCTTGTCTTTCGG 39 695 776 Antisense
CGAGTGTTCCGTCAAATGCATCAAC 357 249 848 Antisense
AATCATCTCGATTCTTTGCGCAATT 275 171 1023 Antisense
GCGCAATTTTTACTACAGACGTTCA 208 285 1040 Antisense
Sequence Source Affymetrix Proprietary Database