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[185262_at]

Description T28A11.7 /REP_DB=WormBase Gene ID /WP=CE20111 /TR=P91513 /GB=AAC48118.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 43      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 5.4
(-2.8)
A 		46
(3)
A 		12.2
(-1.9)
A 		4.2
(-3)
A 		42
B 33.4
(-3)
A 		67.5
(3)
A 		55.1
(0.8)
A 		37.4
(-2.3)
A 		34
C 63.3
(2.5)
A 		66.2
(3)
A 		51.8
(0.3)
A 		34.1
(-3)
A 		32
avr 34
(-1.5) 		59.9
(3) 		39.7
(-0.5) 		25.2
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 47.1
(1.6)
A 		59
(3)
A 		9
(-3)
A 		10.3
(-2.8)
A 		34.4
(0)
A 		52.6
(2.2)
A 		50
B 42.4
(3)
A 		40.3
(2.7)
A 		33.4
(1.6)
A 		2.7
(-3)
A 		16.4
(-0.9)
A 		14.7
(-1.2)
A 		40
C 40.2
(3)
A 		32.9
(1.7)
A 		24.8
(0.3)
A 		31.8
(1.5)
A 		6.3
(-3)
A 		9.4
(-2.5)
A 		34
avr 43.2
(2.8) 		44.1
(3) 		22.4
(-1.5) 		14.9
(-3) 		19
(-2.2) 		25.6
(-0.8) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 2
(-2.1)
A 		10
(3)
A 		3.2
(-1.3)
A 		0.6
(-3)
A 		9
B 10.7
(-1.1)
A 		16.7
(3)
A 		12.8
(0.3)
A 		8
(-3)
A 		9
C 21
(3)
A 		19
(2.2)
A 		18.1
(1.9)
A 		5.8
(-3)
A 		15
avr 11.2
(0.7) 		15.2
(3) 		11.4
(0.8) 		4.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.7
(-0.9)
A 		21
(3)
A 		2
(-3)
A 		2.6
(-2.8)
A 		10.4
(-0.3)
A 		12.8
(0.4)
A 		19
B 14.7
(3)
A 		13.4
(2.4)
A 		8.1
(0.2)
A 		0.7
(-3)
A 		6.7
(-0.4)
A 		5.5
(-0.9)
A 		14
C 14.9
(3)
A 		10
(0.7)
A 		6.3
(-1)
A 		6.4
(-1)
A 		2
(-3)
A 		3.1
(-2.5)
A 		13
avr 12.8
(2) 		14.8
(3) 		5.5
(-1.8) 		3.2
(-3) 		6.4
(-1.3) 		7.1
(-1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15547
Sequence Type Exemplar sequence
Representative Public ID T28A11.7 NCBI
Target Description T28A11.7 /REP_DB=WormBase Gene ID /WP=CE20111 /TR=P91513 /GB=AAC48118.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071495(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071495 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-5) (srbc-5) mRNA, complete cds. 10/11 None
T28A11.7 ENSEMBL cdna:known chromosome:CEL140:V:3260202:3261909:1 gene:T28A11.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028209 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028236 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3260201-3261909(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-5
Ensembl T28A11.7
Entrez Gene 189014 Entrez gene
SwissProt P91513 EMBL-EBI
WormBase CE38111 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503896 Serpentine Receptor, class BC (class B-like) family member (srbc-5) [Caenorhabditis elegans] gb|AAC48118.3| Serpentine receptor, class bc (class b-like) protein 5 [Caenorhabditis elegans] 1.0E-155
blast AAF99938 Serpentine receptor, class bc (class b-like) protein 1 [Caenorhabditis elegans] ref|NP_503913.1| Serpentine Receptor, class BC (class B-like) family member (srbc-1) [Caenorhabditis elegans] 1.0E-132
blast AAC27086 Serpentine receptor, class bc (class b-like) protein 2 [Caenorhabditis elegans] ref|NP_503940.2| Serpentine Receptor, class BC (class B-like) family member (srbc-2) [Caenorhabditis elegans] 1.0E-131
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.9E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503896.2 7 15-37,57-76,86-108,129-151,185-204,217-239,254-273
T28A11.7 7 15-37,57-76,86-108,129-151,185-204,217-239,254-273
Sequence
Target Sequence 
>C. ELEGANS:185262_AT
acgattgtggcgttgtcgatttcaattgagagggtgttggctatttacacaccaattatg
tttcatatctatcgtgatttatgcccttctataattattctgttgtttgctattactatg
ggaatgtttgaaaacctcattttatacatattttgttctataaatatatccgcaattcct
cgagactgtggagttttgcgctgctcacttgacacttgttttttcgacttttggacaact
gatagatcggtaaaaacattacagaatgtgatattcgctcttacctttgtattatccggt
ttactttctacaagactaatgtttctcaataaatcacttggacagaatgcaggagaagag
cattcaaagataaatcacattgctctgatcgatgctgccaacgtgttcttatgtgatttc
ctgccaacaatatcaaattatattcctaaaaccccatttttcagctttaagaatattgga
ccgtatgtttacattataaaattagttggaagtgcagttgaatcatatttcatctcaaag
atattgaaaagaagaagcgcccggtcaagtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGATTGTGGCGTTGTCGATTTCAA 133 95 316 Antisense
ATCTATCGTGATTTATGCCCTTCTA 591 31 382 Antisense
TATTCTGTTGTTTGCTATTACTATG 589 663 411 Antisense
GCTGCTCACTTGACACTTGTTTTTT 465 297 515 Antisense
TGACACTTGTTTTTTCGACTTTTGG 490 565 525 Antisense
GAATGTGATATTCGCTCTTACCTTT 241 333 579 Antisense
TCGCTCTTACCTTTGTATTATCCGG 689 599 590 Antisense
TCACATTGCTCTGATCGATGCTGCC 700 625 690 Antisense
CGATGCTGCCAACGTGTTCTTATGT 707 247 705 Antisense
GTTCTTATGTGATTTCCTGCCAACA 653 443 720 Antisense
AAGAAGAAGCGCCCGGTCAAGTGTT 456 151 864 Antisense
Sequence Source Affymetrix Proprietary Database