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[185261_at]

Description B0238.14 /REP_DB=WormBase Gene ID /WP=CE20446 /TR=Q9TXS1 /GB=AAD34662.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 05      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 27.4
(2.5)
A 		4.6
(-3)
A 		29.4
(3)
A 		15.6
(-0.3)
A 		25
B 37.8
(0.6)
A 		5.5
(-2.9)
A 		4.5
(-3)
A 		60.3
(3)
A 		56
C 4.6
(-3)
A 		8.3
(-2.6)
A 		4.9
(-3)
A 		62.6
(3)
A 		58
avr 23.3
(-0.4) 		6.1
(-3) 		12.9
(-2) 		46.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 20.1
(-1.6)
A 		18.9
(-1.7)
A 		75.3
(3)
A 		4.7
(-2.9)
A 		51.3
(1)
A 		3.8
(-3)
A 		72
B 11.2
(-1.8)
A 		8.4
(-2.2)
A 		40.4
(3)
A 		25.3
(0.5)
A 		30
(1.3)
A 		3.6
(-3)
A 		37
C 3.7
(-2.9)
A 		55.8
(3)
A 		14.3
(-1.7)
A 		34.6
(0.6)
A 		3.1
(-3)
A 		4.9
(-2.8)
A 		53
avr 11.7
(-1.8) 		27.7
(0.6) 		43.3
(3) 		21.5
(-0.3) 		28.1
(0.7) 		4.1
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10
(3)
A 		1
(-3)
A 		7.7
(1.5)
A 		2.3
(-2.1)
A 		9
B 12.1
(2.6)
A 		1.4
(-2.8)
A 		1
(-3)
A 		12.8
(3)
A 		12
C 1.5
(-3)
A 		2.4
(-2.4)
A 		1.7
(-2.9)
A 		10.6
(3)
A 		9
avr 7.9
(2.4) 		1.6
(-3) 		3.5
(-1.4) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.7
(-1.9)
A 		6.7
(-0.8)
A 		16.4
(3)
A 		1.2
(-2.9)
A 		15.5
(2.7)
A 		0.9
(-3)
A 		16
B 3.9
(-1.6)
A 		2.8
(-2.2)
A 		9.8
(1.7)
A 		6.7
(-0)
A 		12.2
(3)
A 		1.3
(-3)
A 		11
C 1.4
(-2.9)
A 		17
(3)
A 		3.6
(-2)
A 		7
(-0.8)
A 		1
(-3)
A 		1.6
(-2.8)
A 		16
avr 3
(-1.8) 		8.8
(2.2) 		9.9
(3) 		5
(-0.4) 		9.6
(2.8) 		1.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11527
Sequence Type Exemplar sequence
Representative Public ID B0238.14 NCBI
Target Description B0238.14 /REP_DB=WormBase Gene ID /WP=CE20446 /TR=Q9TXS1 /GB=AAD34662.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038868 ENSEMBL cdna:SNAP chromosome:CEL140:V:5243555:5249374:-1 9/11 None
B0238.14 ENSEMBL cdna:known chromosome:CEL140:V:5248849:5249646:-1 gene:B0238.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5248848-5249646(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0238.14
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65992 Hypothetical protein B0238.13 [Caenorhabditis elegans] ref|NP_504401.1| B0238.13 [Caenorhabditis elegans] 0.0
blast AAK68262 Hypothetical protein C52A10.2 [Caenorhabditis elegans] ref|NP_504398.1| C52A10.2 [Caenorhabditis elegans] 0.0
blast AAB65983 Hypothetical protein B0238.1 [Caenorhabditis elegans] ref|NP_504400.1| B0238.1 [Caenorhabditis elegans] 0.0
blast CAE62544 Hypothetical protein CBG06653 [Caenorhabditis briggsae] 8.0E-62
blast AAB65987 Serpentine receptor, class t protein 69 [Caenorhabditis elegans] ref|NP_504408.3| Serpentine Receptor, class T family member (srt-69) [Caenorhabditis elegans] 1.0E-55
blast CAE62645 Hypothetical protein CBG06780 [Caenorhabditis briggsae] 9.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.7E-34
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002018 EMBL-EBI Carboxylesterase, type B 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.5E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
B0238.14 6 7-29,49-68,81-100,128-150,167-189,204-226
SNAP00000038868 3 11-30,57-79,96-118
Sequence
Target Sequence 
>C. ELEGANS:185261_AT
atgcgatttaccgattgttgctttattatccgtttttcgaattttgatatttttaaacat
ggctcacatgtaccttaaaacgattaaattgattcttgctctcattttatttcggattct
tttgttattgatctacggattgacaattcaaaatatggaaatgtaccctccaggctgggg
atatgatttcactgtcccatacagtcataccttcgacactttggagatttctctcagttt
cccatgcctaattatttccttcatttcctacttgataattacatatttgattatttcggt
aaaaaaattgcatagcaatgcgaggtccagaaaagatgaaattgcaatcctgctgcaatc
aagttttgttacaacttacatcactgtgatgatatgcttatggcatccagctctgttcaa
atttgttaacattattgatatgactagtatcacaaatcaagcaatcttaaatggtctctg
gattcttcactgttacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGATTTACCGATTGTTGCTTTA 18 43 165 Antisense
TGTTGCTTTATTATCCGTTTTTCGA 25 563 180 Antisense
TGCTCTCATTTTATTTCGGATTCTT 421 579 261 Antisense
AATGTACCCTCCAGGCTGGGGATAT 324 159 324 Antisense
CTGTCCCATACAGTCATACCTTCGA 552 239 356 Antisense
ATACCTTCGACACTTTGGAGATTTC 664 21 371 Antisense
TGGAGATTTCTCTCAGTTTCCCATG 299 549 386 Antisense
AGTTTCCCATGCCTAATTATTTCCT 220 63 400 Antisense
TTATTTCCTTCATTTCCTACTTGAT 473 679 416 Antisense
CTTATGGCATCCAGCTCTGTTCAAA 187 221 561 Antisense
GTCTCTGGATTCTTCACTGTTACAT 703 469 638 Antisense
Sequence Source Affymetrix Proprietary Database