[Home] | [Total List]

[185259_at]

Description F41E6.13 /REP_DB=WormBase Gene ID /WP=CE10268 /TR=O16466 /GB=AAB65961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 57      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 78      6grp_total > 59      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1389
1 2 3 4 range
A 1906.6
(0)
P 		1511.7
(-1.7)
P 		1232.1
(-3)
P 		2564.5
(3)
P 		1332
B 1711.4
(-1.4)
P 		1507.3
(-2.4)
P 		1391.3
(-3)
P 		2621.1
(3)
P 		1230
C 1954.4
(0.9)
P 		1536.8
(-2)
P 		1402.1
(-3)
P 		2252
(3)
P 		850
avr 1857.5
(-0.3) 		1518.6
(-2.1) 		1341.8
(-3) 		2479.2
(3) 		1137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 831
1 2 3 4 5 6 range
A 1776.3
(0.6)
P 		1701.2
(0.1)
P 		1277.8
(-3)
P 		1616.5
(-0.6)
P 		1592.1
(-0.7)
P 		2108.9
(3)
P 		831
B 1840.2
(1.7)
P 		1434.4
(-3)
P 		1521.3
(-2)
P 		1480.7
(-2.5)
P 		1645.6
(-0.6)
P 		1953.4
(3)
P 		519
C 1952.6
(1.9)
P 		1406.5
(-3)
P 		1476.7
(-2.4)
P 		1594.9
(-1.3)
P 		1651.4
(-0.8)
P 		2072.8
(3)
P 		666
avr 1856.4
(1.2) 		1514
(-2.1) 		1425.3
(-3) 		1564
(-1.7) 		1629.7
(-1) 		2045
(3) 		620
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 694.2
(3)
P 		328.1
(-2.9)
P 		322.1
(-3)
P 		375.4
(-2.1)
P 		372
B 545.7
(2.7)
P 		372.3
(-1.7)
P 		322.4
(-3)
P 		558.6
(3)
P 		236
C 647
(3)
P 		441.8
(-1.6)
P 		488.7
(-0.6)
P 		379.7
(-3)
P 		267
avr 629
(3) 		380.7
(-2.9) 		377.7
(-3) 		437.9
(-1.6) 		251

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 327.4
(-2.1)
P 		605
(3)
P 		278.3
(-3)
P 		410
(-0.6)
P 		480.4
(0.7)
P 		513.5
(1.3)
P 		327
B 640.3
(1.5)
P 		477.5
(-1.2)
P 		369.4
(-3)
P 		392.2
(-2.6)
P 		668.6
(2)
P 		728.4
(3)
P 		359
C 723.7
(3)
P 		429.2
(-1.4)
P 		375.8
(-2.2)
P 		320.7
(-3)
P 		534.4
(0.2)
P 		693.9
(2.6)
P 		403
avr 563.8
(1.4) 		503.9
(0.2) 		341.2
(-3) 		374.3
(-2.3) 		561.1
(1.3) 		645.3
(3) 		304
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12381
Sequence Type Exemplar sequence
Representative Public ID F41E6.13 NCBI
Target Description F41E6.13 /REP_DB=WormBase Gene ID /WP=CE10268 /TR=O16466 /GB=AAB65961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171491(11), NM_171492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171491 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-283) (tag-283) mRNA, complete cds. 11/11 None
NM_171492 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-283) (tag-283) mRNA, complete cds. 11/11 None
SNAP00000009432 ENSEMBL cdna:SNAP chromosome:CEL140:V:8632312:8633913:-1 11/11 None
GENEFINDER00000009442 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8632312:8633913:-1 11/11 None
F41E6.13a ENSEMBL cdna:known chromosome:CEL140:V:8631811:8633913:-1 gene:F41E6.13 11/11 A 
F41E6.13b.1 ENSEMBL cdna:known chromosome:CEL140:V:8631857:8633913:-1 gene:F41E6.13 11/11 None
F41E6.13b.2 ENSEMBL cdna:known chromosome:CEL140:V:8631857:8633915:-1 gene:F41E6.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8632312-8633914(-) 100.0 100.0
Public Domain and Genome References
Ensembl F41E6.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65961 Temporarily assigned gene name protein 283, isoform a [Caenorhabditis elegans] ref|NP_741576.1| Temporarily Assigned Gene name family member (tag-283) [Caenorhabditis elegans] 0.0
blast AAM45377 Temporarily assigned gene name protein 283, isoform b [Caenorhabditis elegans] ref|NP_741577.1| Temporarily Assigned Gene name family member (tag-283) [Caenorhabditis elegans] 0.0
blast CAE58348 Hypothetical protein CBG01469 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.5E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.097
Sequence
Target Sequence 
>C. ELEGANS:185259_AT
ggacatcggctctttgaattccgacgtggcgtaactcgctgtgtcaatatctattcgcta
tgcttctcatcagattcaaaatacttgacatcgtcttcaaatactgaaacagtgcacgtc
ttcaaacttgagaaaacggaaggtgttgacaacaagccagaagcgtctaccgaaggtggt
ggatggttcgatgctatcaacaagaccttctctgcgtatatgccaagtcaagtcctgcaa
gttggggagctgatgacgacggaacgtagttttgcaactgccaagcttccaggagccgca
aggagtaatcaagtatcacttgtttcacataaaaaccagcaatacgtgatggctgctaca
tcagacggattcgtatacgcctatcgactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATCGGCTCTTTGAATTCCGAC 269 523 673 Antisense
AATTCCGACGTGGCGTAACTCGCTG 568 175 689 Antisense
ACTCGCTGTGTCAATATCTATTCGC 350 99 706 Antisense
TCTATTCGCTATGCTTCTCATCAGA 515 615 722 Antisense
GAAACAGTGCACGTCTTCAAACTTG 469 355 778 Antisense
ACAACAAGCCAGAAGCGTCTACCGA 409 111 821 Antisense
AACAAGACCTTCTCTGCGTATATGC 421 135 871 Antisense
GCGTATATGCCAAGTCAAGTCCTGC 661 287 886 Antisense
TTGCAACTGCCAAGCTTCCAGGAGC 431 703 944 Antisense
GGCTGCTACATCAGACGGATTCGTA 54 541 1023 Antisense
GGATTCGTATACGCCTATCGACTGG 323 509 1039 Antisense
Sequence Source Affymetrix Proprietary Database