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[185258_at]

Description Y75B8A.13 /REP_DB=WormBase Gene ID /WP=CE23025 /TR=Q9XW69 /GB=CAA22101.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 13      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 80      6grp_total > 13      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 268.8
(2.3)
P 		188.6
(-2.2)
P 		282
(3)
P 		173.9
(-3)
P 		108
B 278.4
(3)
P 		263.9
(2.3)
P 		161.7
(-3)
P 		170.5
(-2.5)
P 		117
C 274.8
(3)
P 		270.2
(2.7)
P 		238.6
(0.4)
P 		189.7
(-3)
P 		85
avr 274
(3) 		240.9
(0.9) 		227.4
(0.1) 		178
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 239.8
(1.9)
P 		264.8
(3)
P 		124.8
(-3)
P 		240.2
(1.9)
P 		175.9
(-0.8)
P 		197.5
(0.1)
P 		140
B 243.4
(3)
P 		231.2
(2.3)
P 		234.8
(2.5)
P 		157
(-2)
P 		152.7
(-2.2)
P 		138.8
(-3)
P 		105
C 286.1
(2.8)
P 		237.8
(1.3)
P 		293.2
(3)
P 		241
(1.4)
P 		218.9
(0.7)
P 		102.2
(-3)
P 		191
avr 256.4
(3) 		244.6
(2.4) 		217.6
(0.9) 		212.7
(0.6) 		182.5
(-1) 		146.2
(-3) 		110
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 97.9
(3)
P 		40.9
(-1.7)
P 		73.7
(1)
P 		25.5
(-3)
P 		72
B 88.8
(3)
P 		65.2
(0.3)
P 		37.5
(-2.9)
P 		36.3
(-3)
P 		53
C 91
(3)
P 		77.7
(1.6)
P 		83.2
(2.2)
P 		32
(-3)
P 		59
avr 92.6
(3) 		61.3
(-0.1) 		64.8
(0.3) 		31.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 44.2
(-1.5)
P 		94.2
(3)
P 		27.2
(-3)
P 		60.9
(0)
P 		53.1
(-0.7)
P 		48.1
(-1.1)
P 		67
B 84.7
(3)
P 		77
(1.9)
P 		57
(-0.9)
P 		41.6
(-3)
P 		62
(-0.2)
P 		51.8
(-1.6)
P 		43
C 106.1
(3)
P 		72.6
(0.2)
P 		74.6
(0.4)
P 		48.5
(-1.8)
P 		70.8
(0.1)
P 		34.2
(-3)
P 		72
avr 78.3
(2.5) 		81.3
(3) 		52.9
(-1.7) 		50.3
(-2.1) 		62
(-0.2) 		44.7
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7570
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.13 NCBI
Target Description Y75B8A.13 /REP_DB=WormBase Gene ID /WP=CE23025 /TR=Q9XW69 /GB=CAA22101.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067185 NCBI Caenorhabditis elegans Y75B8A.13 (Y75B8A.13) mRNA, complete cds. 11/11 None
SNAP00000020079 ENSEMBL cdna:SNAP chromosome:CEL140:III:12202388:12209875:-1 11/11 None
GENEFINDER00000020161 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12203773:12215561:-1 11/11 None
Y75B8A.13 ENSEMBL cdna:known chromosome:CEL140:III:12203773:12215561:-1 gene:Y75B8A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12203768-12215557(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.13
Entrez Gene 176648 Entrez gene
SwissProt Q9XW69 EMBL-EBI
WormBase CE23025 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22101 Hypothetical protein Y75B8A.13 [Caenorhabditis elegans] ref|NP_499586.1| Y75B8A.13 [Caenorhabditis elegans] 0.0
blast CAA22101 Hypothetical protein Y75B8A.13 [Caenorhabditis elegans] ref|NP_499586.1| Y75B8A.13 [Caenorhabditis elegans] 1.0E-122
blast AAL68190 GH09355p [Drosophila melanogaster] 6.0E-14
blast AAF50015 CG6004-PB [Drosophila melanogaster] ref|NP_648504.1| CG6004-PB [Drosophila melanogaster] 6.0E-14
blast AAL68190 GH09355p [Drosophila melanogaster] 7.0E-14
blast AAF50015 CG6004-PB [Drosophila melanogaster] ref|NP_648504.1| CG6004-PB [Drosophila melanogaster] 7.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185258_AT
gttcagcttccccagatgaatctactgaagaaccatcccaggatcacactccacaggacc
ttcccatggatcaagctccaccacaagcggaagaagatcttctggaaagatctgatgcag
atccaggatctcgggatgaatcacagaacgacgttacagcatctcttgatggctctactg
aagaagcatcccaggatcacactgaatttgtagctgatactccgggagctggagatgaaa
gcactgatgatgctctgaaccttccgatggataccgatcaagctccaccacatgcgggag
aagaagatcttctggaaagatctgatgcagatttcttcgctccacgagtccgcgatgaat
cacagaacgattcccaagattcagaagatgtcacagcatcgcttgatggctctactgaag
aagcatcccaggatcactcaggaactcgagagtctagtgaaagatccgaaagtagttcag
aatctccgaattcttctccacaactaacaactcctgctgctccggctcaagaatctacag
aaagttccgccgctcaaaaacgtgaattcctgcctgaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGCTTCCCCAGATGAATCTAC 211 445 1010 Antisense
GAAGAACCATCCCAGGATCACACTC 483 339 1036 Antisense
GAACGACGTTACAGCATCTCTTGAT 69 347 1155 Antisense
GCATCTCTTGATGGCTCTACTGAAG 213 309 1168 Antisense
ATGCTCTGAACCTTCCGATGGATAC 643 41 1259 Antisense
GATGGATACCGATCAAGCTCCACCA 519 405 1275 Antisense
ATCTGATGCAGATTTCTTCGCTCCA 92 35 1329 Antisense
GTCACAGCATCGCTTGATGGCTCTA 46 465 1399 Antisense
GCATCCCAGGATCACTCAGGAACTC 646 309 1432 Antisense
TACAGAAAGTTCCGCCGCTCAAAAA 282 641 1545 Antisense
AAAACGTGAATTCCTGCCTGAACAC 413 131 1566 Antisense
Sequence Source Affymetrix Proprietary Database