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[185257_at]

Description Y75B8A.23 /REP_DB=WormBase Gene ID /WP=CE23034 /TR=Q9XW64 /GB=CAA22107.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      6grp_total > 95      4grp_total > 10      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 35.9
(-2.5)
A 		68.7
(-2)
A 		6.3
(-3)
A 		376.7
(3)
P 		370
B 59.3
(-2.3)
P 		46.8
(-2.6)
A 		28.5
(-3)
A 		292.5
(3)
P 		264
C 19.6
(-3)
A 		60.6
(-2.4)
A 		31.7
(-2.8)
A 		414.3
(3)
P 		395
avr 38.3
(-2.7) 		58.7
(-2.4) 		22.2
(-3) 		361.2
(3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 77.1
(-3)
P 		80.3
(-2.9)
P 		148.8
(-0.5)
P 		187
(0.8)
P 		217.7
(1.9)
P 		250.2
(3)
P 		173
B 109.2
(-3)
P 		111.1
(-2.9)
P 		107.6
(-3)
P 		141.7
(-2)
P 		302.7
(3)
P 		244.7
(1.2)
P 		195
C 73.2
(-3)
P 		115.4
(-1.9)
P 		90
(-2.5)
A 		148.8
(-1)
P 		260.7
(2.1)
P 		294.6
(3)
P 		221
avr 86.5
(-3) 		102.3
(-2.5) 		115.5
(-2) 		159.2
(-0.5) 		260.4
(2.9) 		263.2
(3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 13.1
(-1.7)
A 		14.9
(-1.5)
A 		1.6
(-3)
A 		55.1
(3)
P 		54
B 18.9
(-1.7)
P 		11.6
(-2.5)
A 		6.6
(-3)
A 		62.3
(3)
P 		56
C 6.5
(-3)
A 		17.4
(-2)
A 		11
(-2.6)
A 		69.9
(3)
P 		63
avr 12.8
(-2.3) 		14.6
(-2.1) 		6.4
(-3) 		62.4
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 14.2
(-3)
P 		28.6
(-1.3)
P 		32.4
(-0.9)
P 		47.4
(0.9)
P 		65.7
(3)
P 		60.9
(2.4)
P 		52
B 38
(-2.3)
P 		37
(-2.3)
P 		26.1
(-3)
P 		37.5
(-2.3)
P 		123
(3)
P 		91.2
(1)
P 		97
C 27.1
(-2.7)
P 		35.2
(-2)
P 		22.9
(-3)
A 		29.9
(-2.4)
P 		84.3
(1.9)
P 		98.6
(3)
P 		76
avr 26.4
(-3) 		33.6
(-2.3) 		27.1
(-2.9) 		38.3
(-1.9) 		91
(3) 		83.6
(2.3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185257_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6576
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.23 NCBI
Target Description Y75B8A.23 /REP_DB=WormBase Gene ID /WP=CE23034 /TR=Q9XW64 /GB=CAA22107.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067194 NCBI Caenorhabditis elegans Y75B8A.23 (Y75B8A.23) mRNA, complete cds. 11/11 None
SNAP00000020086 ENSEMBL cdna:SNAP chromosome:CEL140:III:12250553:12265207:1 11/11 None
GENEFINDER00000020190 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12250553:12250962:1 11/11 None
Y75B8A.23 ENSEMBL cdna:known chromosome:CEL140:III:12250553:12250865:1 gene:Y75B8A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12250548-12250861(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.23
Entrez Gene 190709 Entrez gene
SwissProt Q9XW64 EMBL-EBI
WormBase CE23034 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22107 Hypothetical protein Y75B8A.23 [Caenorhabditis elegans] ref|NP_499595.1| Y75B8A.23 [Caenorhabditis elegans] 1.0E-23
blast CAA22107 Hypothetical protein Y75B8A.23 [Caenorhabditis elegans] ref|NP_499595.1| Y75B8A.23 [Caenorhabditis elegans] 5.0E-23
blast CAA22107 Hypothetical protein Y75B8A.23 [Caenorhabditis elegans] ref|NP_499595.1| Y75B8A.23 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:185257_AT
taatcaacgatgactctgatgtgaaagaactagatgactgggacccggagctcggcgaag
acgacgatacttctgccacttgggactcgtcaagttcttctgatggagaaactgctgata
atgatgatttttgcacacctactcacgacattggatactcgaatgatccatattatgtgg
aaaagcgaatggttgcaggatccaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCAACGATGACTCTGATGTGAA 422 635 35 Antisense
AAGAACTAGATGACTGGGACCCGGA 239 153 59 Antisense
TAGATGACTGGGACCCGGAGCTCGG 658 651 65 Antisense
GAAGACGACGATACTTCTGCCACTT 552 339 91 Antisense
TTCTGCCACTTGGGACTCGTCAAGT 536 691 105 Antisense
GGACTCGTCAAGTTCTTCTGATGGA 516 523 117 Antisense
GTTCTTCTGATGGAGAAACTGCTGA 148 443 128 Antisense
AATGATGATTTTTGCACACCTACTC 374 163 154 Antisense
TGCACACCTACTCACGACATTGGAT 402 577 166 Antisense
TACTCACGACATTGGATACTCGAAT 114 645 174 Antisense
AGCGAATGGTTGCAGGATCCAATCA 52 81 218 Antisense
Sequence Source Affymetrix Proprietary Database