[Home] | [Total List]

[185256_s_at]

Description H05C05.3 /REP_DB=WormBase Gene ID /WP=CE27179 /TR=Q9TXU4 /GB=AAK29841.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 33.7
(-0.9)
A 		12.9
(-2.7)
A 		9.4
(-3)
A 		77.4
(3)
A 		68
B 12.5
(-3)
A 		52.8
(2.2)
A 		19.4
(-2.1)
A 		58.8
(3)
A 		46
C 8.5
(-3)
A 		24.7
(0.1)
A 		8.5
(-3)
A 		40.2
(3)
A 		32
avr 18.2
(-2.3) 		30.1
(-0.7) 		12.4
(-3) 		58.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 17.2
(2.7)
A 		17.9
(3)
A 		4.6
(-3)
A 		8.8
(-1.1)
A 		17.7
(2.9)
A 		17.1
(2.6)
A 		13
B 24.9
(3)
A 		16.8
(0.6)
A 		4.9
(-2.8)
A 		4.8
(-2.9)
A 		6.7
(-2.3)
A 		4.3
(-3)
A 		21
C 37
(3)
A 		5.7
(-3)
A 		22.4
(0.2)
A 		10.1
(-2.2)
A 		13.2
(-1.6)
A 		7.1
(-2.7)
A 		31
avr 26.4
(3) 		13.5
(-1.2) 		10.6
(-2.1) 		7.9
(-3) 		12.5
(-1.5) 		9.5
(-2.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.3
(3)
A 		2.8
(-2.8)
A 		2.5
(-3)
A 		11.3
(2.4)
A 		10
B 4
(-3)
A 		13
(3)
A 		4.5
(-2.7)
A 		12.5
(2.7)
A 		9
C 2.8
(-3)
A 		7.1
(3)
A 		3
(-2.7)
A 		6.8
(2.6)
A 		4
avr 6.4
(-0.3) 		7.6
(0.7) 		3.3
(-3) 		10.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.2
(-0.6)
A 		6.4
(3)
A 		1
(-3)
A 		2.2
(-1.7)
A 		5.3
(1.8)
A 		4.2
(0.6)
A 		5
B 8.7
(3)
A 		5.6
(0.5)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		2.7
(-1.8)
A 		1.6
(-2.7)
A 		8
C 13.7
(3)
A 		1.7
(-3)
A 		5.7
(-1)
A 		2
(-2.9)
A 		4.3
(-1.7)
A 		2.4
(-2.7)
A 		12
avr 8.5
(3) 		4.6
(-0.5) 		2.6
(-2.3) 		1.8
(-3) 		4.1
(-0.9) 		2.7
(-2.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185256_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6246
Sequence Type Exemplar sequence
Representative Public ID H05C05.3 NCBI
Target Description H05C05.3 /REP_DB=WormBase Gene ID /WP=CE27179 /TR=Q9TXU4 /GB=AAK29841.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065244(11), NM_067868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065244 NCBI Caenorhabditis elegans H05C05.3 (H05C05.3) mRNA, complete cds. 11/11 A 
NM_067868 NCBI Caenorhabditis elegans Y54G2A.20 (Y54G2A.20) mRNA, complete cds. 11/11 A 
GENEFINDER00000036597 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2896967:2900635:-1 10/11 None
H05C05.3 ENSEMBL cdna:known chromosome:CEL140:III:2967038:2968922:-1 gene:H05C05.3 11/11 A 
Y54G2A.20 ENSEMBL cdna:known chromosome:CEL140:IV:2896967:2900635:-1 gene:Y54G2A.20 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036500 5/11 Cross Hyb Matching Probes None
SNAP00000036501 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2967037-2968242(-) 100.0 100.0
chrIV:2896976-2899659(-) 97.17 97.17
Public Domain and Genome References
Gene Title

Ensembl H05C05.3
Y54G2A.20
Entrez Gene 186695 Entrez gene
190281 Entrez gene
SwissProt Q9TXU4 EMBL-EBI
Q9N3B3 EMBL-EBI
WormBase CE30283 Wormbase
CE25460 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK29841 Hypothetical protein H05C05.3 [Caenorhabditis elegans] ref|NP_497645.2| H05C05.3 [Caenorhabditis elegans] 0.0
blast AAF59578 Hypothetical protein Y54G2A.20 [Caenorhabditis elegans] ref|NP_500269.1| Y54G2A.20 [Caenorhabditis elegans] 0.0
blast AAK29841 Hypothetical protein H05C05.3 [Caenorhabditis elegans] ref|NP_497645.2| H05C05.3 [Caenorhabditis elegans] 1.0E-112
blast AAB94979 Hypothetical protein F52C6.14 [Caenorhabditis elegans] ref|NP_494132.1| F52C6.14 [Caenorhabditis elegans] 1.0E-103
blast AAK29841 Hypothetical protein H05C05.3 [Caenorhabditis elegans] ref|NP_497645.2| H05C05.3 [Caenorhabditis elegans] 3.0E-92
blast AAB94979 Hypothetical protein F52C6.14 [Caenorhabditis elegans] ref|NP_494132.1| F52C6.14 [Caenorhabditis elegans] 2.0E-86
Sequence
Target Sequence 
>C. ELEGANS:185256_S_AT
gtcatttcacgcttccagacgaaaatggattgaacttcactctagttgtaatcacaccac
agcacatggaaaatttgaagaagtactctcacaaaatggttttattggatgacacacaca
atgtgagccggtttcttgttatccagctcgacaacatcatcagaaatcgcaatttttttg
gagaaatcaaaaaattactgccagagttccaaccggcatatttcatgactgatgaagcga
attgcttctggaacgggttttcagatgtttttgacaacacccgcacccacaaagtaattt
gtaggtggcatgttttgcacatggcccctgcgttgaaaattcgtaaaaaggcagagaaag
agaatacgccaaccgcaacacgagaccctgcacttgatccggatactcacccagaacagc
atgagagccgaattactgattggaagagatgtattttgtgtaaaaatccggcgcattacg
attgcacactaattgtaaatgataaatgcccatgctccaacaattctaaattcgagcttt
atccgtctaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCATTTCACGCTTCCAGACGAAAA 648 467 233 Antisense
ATGGATTGAACTTCACTCTAGTTGT 415 49 257 Antisense
AGTTGTAATCACACCACAGCACATG 288 65 276 Antisense
GATGACACACACAATGTGAGCCGGT 593 411 340 Antisense
CATGGCCCCTGCGTTGAAAATTCGT 36 209 552 Antisense
AAAGAGAATACGCCAACCGCAACAC 76 123 589 Antisense
GGATACTCACCCAGAACAGCATGAG 341 511 633 Antisense
GCATGAGAGCCGAATTACTGATTGG 635 309 651 Antisense
ATCCGGCGCATTACGATTGCACACT 137 39 698 Antisense
TGCCCATGCTCCAACAATTCTAAAT 138 585 739 Antisense
ATTCGAGCTTTATCCGTCTAATTTT 477 9 762 Antisense
Sequence Source Affymetrix Proprietary Database