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[185255_at]

Description H05C05.3 /REP_DB=WormBase Gene ID /WP=CE27179 /TR=Q9TXU4 /GB=AAK29841.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 24
(0.2)
A 		32
(3)
A 		15
(-3)
A 		18.5
(-1.8)
A 		17
B 34.2
(3)
A 		7.1
(-2.3)
A 		3.4
(-3)
A 		20.9
(0.4)
A 		31
C 4.6
(-3)
A 		31.1
(2.7)
A 		30.4
(2.6)
A 		32.3
(3)
A 		28
avr 20.9
(0.6) 		23.4
(2.6) 		16.3
(-3) 		23.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 18.4
(3)
A 		3
(-3)
A 		8.3
(-0.9)
A 		3
(-3)
A 		3.5
(-2.8)
A 		3.8
(-2.7)
A 		15
B 4.3
(-2.3)
A 		5.1
(-2.1)
A 		5
(-2.1)
A 		2.4
(-3)
A 		19.7
(3)
A 		5.6
(-1.9)
A 		17
C 37.5
(2.5)
A 		8.8
(-1.9)
A 		6.1
(-2.3)
A 		40.6
(3)
A 		3.1
(-2.8)
A 		1.8
(-3)
A 		39
avr 20.1
(3) 		5.6
(-2.3) 		6.5
(-2) 		15.3
(1.2) 		8.8
(-1.1) 		3.7
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.7
(3)
A 		6.9
(1.2)
A 		3.9
(-1.8)
A 		2.7
(-3)
A 		6
B 10.9
(3)
A 		1.7
(-2.5)
A 		0.8
(-3)
A 		4.5
(-0.8)
A 		10
C 1.5
(-3)
A 		8.9
(1.9)
A 		10.6
(3)
A 		5.4
(-0.4)
A 		9
avr 7
(3) 		5.8
(0.4) 		5.1
(-1.1) 		4.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.4
(3)
A 		1.1
(-2.3)
A 		1.8
(-0.7)
A 		0.8
(-3)
A 		1
(-2.5)
A 		0.9
(-2.8)
A 		3
B 1.5
(-2.3)
A 		1.7
(-2.1)
A 		1.2
(-2.5)
A 		0.6
(-3)
A 		8
(3)
A 		2.1
(-1.8)
A 		7
C 13.9
(3)
A 		2.7
(-2.1)
A 		1.6
(-2.5)
A 		8.2
(0.4)
A 		1
(-2.8)
A 		0.6
(-3)
A 		13
avr 6.3
(3) 		1.8
(-2.3) 		1.5
(-2.6) 		3.2
(-0.6) 		3.3
(-0.5) 		1.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6246
Sequence Type Exemplar sequence
Representative Public ID H05C05.3 NCBI
Target Description H05C05.3 /REP_DB=WormBase Gene ID /WP=CE27179 /TR=Q9TXU4 /GB=AAK29841.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065244(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065244 NCBI Caenorhabditis elegans H05C05.3 (H05C05.3) mRNA, complete cds. 11/11 A 
H05C05.3 ENSEMBL cdna:known chromosome:CEL140:III:2967038:2968922:-1 gene:H05C05.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2967037-2968242(-) 100.0 100.0
chrIV:2896976-2899659(-) 97.17 97.17
Public Domain and Genome References
Gene Title
Ensembl H05C05.3
Entrez Gene 186695 Entrez gene
SwissProt Q9TXU4 EMBL-EBI
WormBase CE30283 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29841 Hypothetical protein H05C05.3 [Caenorhabditis elegans] ref|NP_497645.2| H05C05.3 [Caenorhabditis elegans] 0.0
blast AAB94979 Hypothetical protein F52C6.14 [Caenorhabditis elegans] ref|NP_494132.1| F52C6.14 [Caenorhabditis elegans] 9.0E-84
blast AAF59578 Hypothetical protein Y54G2A.20 [Caenorhabditis elegans] ref|NP_500269.1| Y54G2A.20 [Caenorhabditis elegans] 3.0E-83
Sequence
Target Sequence 
>C. ELEGANS:185255_AT
tgtgagccggtttcttgttatccagctcgacaacatcatcagaaatcgcaatttttttgg
agaaatcaaaaaattactgccagagttccaaccggcatatttcatgactgatgaagcgaa
ttgcttctggaacgggttttcagatgtttttgacaacacccgcacccacaaagtaatttg
taggtggcatgttttgcacatggcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGAGCCGGTTTCTTGTTATCCAG 76 555 354 Antisense
GTTATCCAGCTCGACAACATCATCA 498 447 370 Antisense
GACAACATCATCAGAAATCGCAATT 676 365 382 Antisense
AATTACTGCCAGAGTTCCAACCGGC 246 175 425 Antisense
AGAGTTCCAACCGGCATATTTCATG 351 67 435 Antisense
CCAACCGGCATATTTCATGACTGAT 355 275 441 Antisense
AAGCGAATTGCTTCTGGAACGGGTT 505 147 467 Antisense
TGGAACGGGTTTTCAGATGTTTTTG 632 545 481 Antisense
CAGATGTTTTTGACAACACCCGCAC 236 205 494 Antisense
CACCCGCACCCACAAAGTAATTTGT 58 199 510 Antisense
GGTGGCATGTTTTGCACATGGCCCC 160 499 536 Antisense
Sequence Source Affymetrix Proprietary Database