[Home] | [Total List]

[185253_at]

Description C37C3.10 /REP_DB=WormBase Gene ID /WP=CE06935 /TR=Q22920 /GB=AAC25866.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 45.6
(0.1)
A 		83.9
(3)
P 		55.6
(0.9)
A 		4
(-3)
A 		80
B 34.2
(-3)
A 		46
(3)
A 		40.7
(0.3)
A 		34.9
(-2.6)
A 		12
C 39.4
(-2.8)
A 		93
(3)
P 		48.1
(-1.9)
A 		38
(-3)
M 		55
avr 39.7
(-1.3) 		74.3
(3) 		48.1
(-0.2) 		25.6
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 48.2
(-3)
A 		55.5
(-2.5)
M 		136.5
(3)
P 		124.1
(2.2)
P 		49.7
(-2.9)
A 		55.9
(-2.5)
M 		88
B 30.9
(-3)
A 		53
(-1.9)
A 		150.4
(3)
P 		101.4
(0.5)
P 		52.9
(-1.9)
P 		65.5
(-1.3)
P 		120
C 29.1
(-3)
A 		39.9
(-2.6)
A 		101.1
(-0.4)
P 		193
(3)
M 		52.4
(-2.1)
P 		68.8
(-1.5)
P 		164
avr 36.1
(-3) 		49.5
(-2.2) 		129.3
(2.4) 		139.5
(3) 		51.7
(-2.1) 		63.4
(-1.4) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.6
(2.5)
A 		18.2
(3)
P 		14.5
(1.7)
A 		0.6
(-3)
A 		18
B 10.9
(2.3)
A 		11.4
(3)
A 		9.4
(0)
A 		7.4
(-3)
A 		4
C 13
(-1)
A 		26.7
(3)
P 		16.8
(0.1)
A 		6.4
(-3)
M 		20
avr 13.5
(0.7) 		18.8
(3) 		13.6
(0.8) 		4.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.9
(-3)
A 		19.7
(-0.1)
M 		29.7
(2.5)
P 		31.5
(3)
P 		15
(-1.4)
A 		13.6
(-1.8)
M 		23
B 10.7
(-3)
A 		17.6
(-1.4)
A 		36.5
(3)
P 		26.9
(0.8)
P 		21.5
(-0.5)
P 		24.4
(0.2)
P 		26
C 10.8
(-3)
A 		12.2
(-2.7)
A 		25.7
(0.2)
P 		38.8
(3)
M 		17
(-1.7)
P 		23
(-0.4)
P 		28
avr 10.1
(-3) 		16.5
(-1.3) 		30.6
(2.5) 		32.4
(3) 		17.8
(-0.9) 		20.3
(-0.3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11376
Sequence Type Exemplar sequence
Representative Public ID C37C3.10 NCBI
Target Description C37C3.10 /REP_DB=WormBase Gene ID /WP=CE06935 /TR=Q22920 /GB=AAC25866.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072625(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072625 NCBI Caenorhabditis elegans C37C3.10 (C37C3.10) mRNA, complete cds. 11/11 None
SNAP00000006084 ENSEMBL cdna:SNAP chromosome:CEL140:V:7864930:7865662:-1 11/11 None
GENEFINDER00000006092 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7862681:7865840:-1 11/11 None
C37C3.10 ENSEMBL cdna:known chromosome:CEL140:V:7864930:7865662:-1 gene:C37C3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7864930-7865663(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.10
Entrez Gene 183290 Entrez gene
SwissProt Q22920 EMBL-EBI
WormBase CE06935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25866 Hypothetical protein C37C3.10 [Caenorhabditis elegans] ref|NP_505026.1| C37C3.10 [Caenorhabditis elegans] 2.0E-56
blast AAC25866 Hypothetical protein C37C3.10 [Caenorhabditis elegans] ref|NP_505026.1| C37C3.10 [Caenorhabditis elegans] 2.0E-40
blast AAB92043 Hypothetical protein F13B6.1 [Caenorhabditis elegans] ref|NP_501191.1| F13B6.1 [Caenorhabditis elegans] 8.0E-15
blast AAB92043 Hypothetical protein F13B6.1 [Caenorhabditis elegans] ref|NP_501191.1| F13B6.1 [Caenorhabditis elegans] 2.0E-13
blast CAE61883 Hypothetical protein CBG05874 [Caenorhabditis briggsae] 3.0E-13
blast CAE65567 Hypothetical protein CBG10560 [Caenorhabditis briggsae] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185253_AT
gaactacgctcacaactcgtactgttacgggatccttaactccattcattcctatacaag
atggcgaccagcttttggtgaatggaagatcgcaagatttatacggatggatatacataa
ctgaacttttggatgttatcaatgtgtatcctttatcgcttaacaacaattcaattgtta
acttccaaccgggcaccaatatattcttccaattggaatcgtcatcgtattccagtatgc
gtgttccagtagcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTACGCTCACAACTCGTACTGT 12 349 29 Antisense
TACTGTTACGGGATCCTTAACTCCA 414 641 48 Antisense
CTTAACTCCATTCATTCCTATACAA 693 221 63 Antisense
ATTCCTATACAAGATGGCGACCAGC 656 5 76 Antisense
GATGGCGACCAGCTTTTGGTGAATG 241 407 88 Antisense
CAATGTGTATCCTTTATCGCTTAAC 654 181 168 Antisense
TCAATTGTTAACTTCCAACCGGGCA 169 629 199 Antisense
CAACCGGGCACCAATATATTCTTCC 525 187 214 Antisense
CTTCCAATTGGAATCGTCATCGTAT 483 217 234 Antisense
ATCGTCATCGTATTCCAGTATGCGT 462 35 246 Antisense
CCAGTATGCGTGTTCCAGTAGCGAG 150 273 260 Antisense
Sequence Source Affymetrix Proprietary Database