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[185252_at]

Description ZK1290.6 /REP_DB=WormBase Gene ID /WP=CE02085 /TR=Q09633 /GB=AAB93313.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 23.6
(-1.3)
A 		6.2
(-3)
A 		40.8
(0.4)
A 		66.4
(3)
P 		60
B 7.5
(-3)
A 		7.6
(-3)
A 		7.8
(-2.9)
A 		35.4
(3)
A 		28
C 20.2
(-3)
A 		40.6
(0.2)
A 		24.7
(-2.3)
A 		57.9
(3)
A 		38
avr 17.1
(-3) 		18.1
(-2.8) 		24.4
(-1.8) 		53.2
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 32.7
(-2.2)
A 		18.8
(-2.8)
A 		12.4
(-3)
A 		21.3
(-2.7)
A 		57.4
(-1.3)
A 		168.4
(3)
P 		156
B 17
(-2.9)
A 		34.4
(-2.1)
A 		14.3
(-3)
A 		27.5
(-2.4)
A 		75.5
(-0.2)
A 		143.4
(3)
P 		129
C 11.1
(-2.3)
A 		41.8
(-0)
A 		1.5
(-3)
A 		45.5
(0.2)
A 		54.5
(0.9)
A 		83.1
(3)
P 		82
avr 20.3
(-2.5) 		31.7
(-1.9) 		9.4
(-3) 		31.4
(-1.9) 		62.5
(-0.4) 		131.6
(3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.6
(1.7)
A 		1.3
(-3)
A 		10.7
(3)
A 		9.7
(2.4)
P 		9
B 2.4
(-2.4)
A 		1.9
(-2.9)
A 		1.8
(-3)
A 		7.6
(3)
A 		6
C 6.7
(-3)
A 		11.7
(3)
A 		8.6
(-0.7)
A 		9.8
(0.7)
A 		5
avr 5.9
(-1.7) 		5
(-3) 		7
(0) 		9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6
(-2.5)
A 		6.7
(-2.4)
A 		2.7
(-3)
A 		5.4
(-2.6)
A 		17.3
(-0.7)
A 		41
(3)
P 		38
B 5.9
(-2.7)
A 		11.4
(-2.1)
A 		3.5
(-3)
A 		7.3
(-2.5)
A 		30.7
(0.3)
A 		53.5
(3)
P 		50
C 4.1
(-2.2)
A 		12.7
(-0.3)
A 		0.4
(-3)
A 		9.2
(-1.1)
A 		17.6
(0.8)
A 		27.8
(3)
P 		27
avr 5.3
(-2.5) 		10.3
(-1.7) 		2.2
(-3) 		7.3
(-2.2) 		21.9
(0.1) 		40.8
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185252_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4525
Sequence Type Exemplar sequence
Representative Public ID ZK1290.6 NCBI
Target Description ZK1290.6 /REP_DB=WormBase Gene ID /WP=CE02085 /TR=Q09633 /GB=AAB93313.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027337(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027337 NCBI Caenorhabditis elegans ZK1290.6 (ZK1290.6) mRNA, complete cds. 11/11 None
SNAP00000002670 ENSEMBL cdna:SNAP chromosome:CEL140:II:7527290:7528099:1 10/11 None
GENEFINDER00000002689 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7525689:7528099:1 11/11 None
ZK1290.6 ENSEMBL cdna:known chromosome:CEL140:II:7525689:7528124:1 gene:ZK1290.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7526009-7528096(+) 93.25 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.6
Entrez Gene 174222 Entrez gene
SwissProt Q09633 EMBL-EBI
WormBase CE36069 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4523 ribonuclease H activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93313 Hypothetical protein ZK1290.6 [Caenorhabditis elegans] ref|NP_001022508.1| ZK1290.6 [Caenorhabditis elegans] 1.0E-132
blast AAB93313 Hypothetical protein ZK1290.6 [Caenorhabditis elegans] ref|NP_001022508.1| ZK1290.6 [Caenorhabditis elegans] 1.0E-129
blast CAE67529 Hypothetical protein CBG13051 [Caenorhabditis briggsae] 8.0E-80
blast CAE67529 Hypothetical protein CBG13051 [Caenorhabditis briggsae] 9.0E-80
blast AAB93313 Hypothetical protein ZK1290.6 [Caenorhabditis elegans] ref|NP_001022508.1| ZK1290.6 [Caenorhabditis elegans] 2.0E-78
blast CAE67529 Hypothetical protein CBG13051 [Caenorhabditis briggsae] 1.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002156 EMBL-EBI RNase H 1.6E-37
Pfam IPR002156 EMBL-EBI RNase H 2.4E-40
Pfam IPR002156 EMBL-EBI RNase H 2.4E-40
Sequence
Target Sequence 
>C. ELEGANS:185252_AT
ggaacactcgttatgtacactgatgggtcgtatttgaaacgtccaccaacttctggaatc
ggaatatttgttggaccaggtcacgaattgaatagatcgcaacgaattcggggacctatt
caggacaataactatgcagagtttattgctgtgaggactgcactgcagaacgctttgaaa
aatgaaaattacagagaccagaaagttgtaatcagaactgattgtttgaatgtgatcgaa
gctcttcaaggaaccagacctacagctttcgtggacgttaaatctcaagtggaatttttg
tcgaagcagtttccgaaaggtgtccacttccagcatgtttatgctcacgcgggtgatcca
ggaaatgaaatggccgatctgtttgctggtcaagcttcttccaaatctcaaaatagtttc
ggtggtggccaacggactcgaagtgcaagcacagctagaggtcgttcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACACTCGTTATGTACACTGATG 42 529 409 Antisense
GAAACGTCCACCAACTTCTGGAATC 495 355 444 Antisense
ATTGCTGTGAGGACTGCACTGCAGA 601 5 553 Antisense
GAAGCTCTTCAAGGAACCAGACCTA 242 341 646 Antisense
GACCTACAGCTTTCGTGGACGTTAA 661 345 665 Antisense
TTCCGAAAGGTGTCCACTTCCAGCA 444 699 719 Antisense
TTATGCTCACGCGGGTGATCCAGGA 197 679 747 Antisense
TGAAATGGCCGATCTGTTTGCTGGT 618 571 774 Antisense
GCTGGTCAAGCTTCTTCCAAATCTC 199 295 793 Antisense
TTCGGTGGTGGCCAACGGACTCGAA 390 681 826 Antisense
GCAAGCACAGCTAGAGGTCGTTCGA 515 319 853 Antisense
Sequence Source Affymetrix Proprietary Database