[Home] | [Total List]

[185251_s_at]

Description F11G11.5 /REP_DB=WormBase Gene ID /WP=CE07058 /TR=P91245 /GB=AAB37837.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 77      6grp_total > 29      4grp_total > 0      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 611
1 2 3 4 range
A 1085.7
(-1.7)
P 		955.1
(-3)
P 		1150.5
(-1.1)
P 		1565.7
(3)
P 		611
B 991.2
(-3)
P 		1126.7
(-1.5)
P 		1036.6
(-2.5)
P 		1547.6
(3)
P 		556
C 1069.1
(-1.5)
P 		968.1
(-3)
P 		1129.4
(-0.6)
P 		1379.4
(3)
P 		411
avr 1048.7
(-2.6) 		1016.6
(-3) 		1105.5
(-1.9) 		1497.6
(3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 710
1 2 3 4 5 6 range
A 1747.2
(3)
P 		1108.4
(-2.4)
P 		1037.5
(-3)
P 		1140.5
(-2.1)
P 		1462.9
(0.6)
P 		1368
(-0.2)
P 		710
B 1438.2
(3)
P 		1116.5
(-2.1)
P 		1060.4
(-3)
P 		1228.1
(-0.3)
P 		1312.6
(1)
P 		1304.4
(0.9)
P 		378
C 1321.9
(2.9)
P 		1327.4
(3)
P 		1174.1
(-0.4)
P 		1239.3
(1.1)
P 		1303.4
(2.5)
P 		1053.8
(-3)
P 		274
avr 1502.4
(3) 		1184.1
(-1.6) 		1090.7
(-3) 		1202.6
(-1.4) 		1359.6
(0.9) 		1242.1
(-0.8) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 395.3
(3)
P 		207.3
(-3)
P 		300.8
(-0)
P 		229.2
(-2.3)
P 		188
B 316.1
(2.1)
P 		278.3
(-0.4)
P 		240.2
(-3)
P 		329.8
(3)
P 		90
C 353.9
(1.5)
P 		278.3
(-1.3)
P 		393.6
(3)
P 		232.6
(-3)
P 		161
avr 355.1
(3) 		254.6
(-3) 		311.5
(0.4) 		263.9
(-2.4) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 322.1
(-0.3)
P 		394.2
(1.7)
P 		225.9
(-3)
P 		289.3
(-1.2)
P 		441.4
(3)
P 		333.1
(-0)
P 		216
B 500.4
(2.3)
P 		371.6
(-0.5)
P 		257.5
(-3)
P 		325.3
(-1.5)
P 		533.3
(3)
P 		486.4
(2)
P 		276
C 490
(3)
P 		405
(0.9)
P 		298.8
(-1.8)
P 		249.2
(-3)
P 		421.8
(1.3)
P 		352.8
(-0.4)
P 		241
avr 437.5
(2.2) 		390.3
(0.8) 		260.7
(-3) 		287.9
(-2.2) 		465.5
(3) 		390.8
(0.8) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185251_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5843
Sequence Type Exemplar sequence
Representative Public ID F11G11.5 NCBI
Target Description F11G11.5 /REP_DB=WormBase Gene ID /WP=CE07058 /TR=P91245 /GB=AAB37837.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062473 NCBI Caenorhabditis elegans F11G11.5 (F11G11.5) mRNA, complete cds. 11/11 None
SNAP00000005479 ENSEMBL cdna:SNAP chromosome:CEL140:II:4857920:4858834:1 11/11 None
GENEFINDER00000005500 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4857920:4858834:1 11/11 None
F11G11.5 ENSEMBL cdna:known chromosome:CEL140:II:4857910:4859129:1 gene:F11G11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4857918-4858833(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11G11.5
Entrez Gene 173836 Entrez gene
SwissProt P91245 EMBL-EBI
WormBase CE07058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494874 F11G11.5 [Caenorhabditis elegans] gb|AAB37837.1| Hypothetical protein F11G11.5 [Caenorhabditis elegans] 6.0E-76
blast CAE56767 Hypothetical protein CBG24571 [Caenorhabditis briggsae] 2.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494874.1 1 190-212
F11G11.5 1 190-212
SNAP00000005479 1 190-212
GENEFINDER00000005500 1 190-212
Sequence
Target Sequence 
>C. ELEGANS:185251_S_AT
gaatgtcaagctcatcagctcagccatcggctccatcagctcccgagcaacagccaacat
cgccgtctcgtccacctccaccggctggatttgtctatcccagcacagacattcaaaact
cttcagaagttcatgtcagcgctccagttccagcaggaccaccaccaccgcatgcttctg
ctggaccagctcctactatgagttcctacgatatgccaccaccatcctatcaggctgcca
tgtcatatccagctgcaccgacgtacggtggatcgactgatcctaaatatcacaatggag
ggcaaccgccgatctactaccagccaccacagattacacaaacgcgtctcccacaaccgg
ccgcaattgagcagatcgttcgagcagttcgtattcaaaatcctgctggaagtaatgtca
tagttcatgttcaacctggagcaccatgccgtcgttgtaccgttggagtgatcactcgtc
aaactgatatgtgctgtcttctatgtctgattatgctcacaatcttcacattcccatttg
gattgatcttcttgtgctgtgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTCAAGCTCATCAGCTCAGCC 651 331 74 Antisense
CACCGGCTGGATTTGTCTATCCCAG 316 201 152 Antisense
TTCAGAAGTTCATGTCAGCGCTCCA 28 687 195 Antisense
GGACCAGCTCCTACTATGAGTTCCT 247 523 256 Antisense
GGCTGCCATGTCATATCCAGCTGCA 609 539 306 Antisense
ACAATGGAGGGCAACCGCCGATCTA 177 113 365 Antisense
AACCGGCCGCAATTGAGCAGATCGT 305 147 428 Antisense
GTTCATGTTCAACCTGGAGCACCAT 336 445 496 Antisense
GATATGTGCTGTCTTCTATGTCTGA 571 425 559 Antisense
TTATGCTCACAATCTTCACATTCCC 468 681 584 Antisense
TGGATTGATCTTCTTGTGCTGTGTC 282 551 612 Antisense
Sequence Source Affymetrix Proprietary Database