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[185250_at]

Description T22B11.1 /REP_DB=WormBase Gene ID /WP=CE17240 /TR=O44564 /GB=AAB94181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 34.3
(0.3)
M 		44.2
(1.4)
A 		3.1
(-3)
A 		59.1
(3)
A 		56
B 28.8
(0.6)
A 		10.4
(-3)
A 		35.3
(1.9)
A 		40.9
(3)
A 		31
C 38
(-1.4)
A 		29
(-2.8)
A 		27.6
(-3)
A 		65.7
(3)
A 		38
avr 33.7
(-0.9) 		27.9
(-1.9) 		22
(-3) 		55.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 58.4
(3)
A 		42.4
(1.2)
A 		41.4
(1.1)
A 		5
(-3)
A 		19.2
(-1.4)
A 		31.1
(-0.1)
A 		53
B 21.6
(0.8)
A 		7
(-2.1)
A 		2.6
(-3)
A 		24.4
(1.4)
A 		20.6
(0.6)
A 		32.6
(3)
A 		30
C 32.3
(1.3)
A 		11.5
(-2.5)
A 		34.1
(1.6)
A 		9
(-3)
A 		41.6
(3)
A 		30.3
(0.9)
A 		33
avr 37.4
(3) 		20.3
(-1.2) 		26
(0.2) 		12.8
(-3) 		27.1
(0.5) 		31.3
(1.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.5
(3)
M 		9.6
(1.5)
A 		0.8
(-3)
A 		8.7
(1.1)
A 		12
B 9.2
(3)
A 		2.6
(-3)
A 		8.2
(2.1)
A 		8.7
(2.5)
A 		7
C 12.6
(3)
A 		8.3
(-3)
A 		9.6
(-1.2)
A 		11.1
(0.9)
A 		4
avr 11.4
(3) 		6.8
(-2.3) 		6.2
(-3) 		9.5
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.8
(1.1)
A 		15.1
(3)
A 		9
(0.3)
A 		1.3
(-3)
A 		5.8
(-1)
A 		7.6
(-0.3)
A 		14
B 7.5
(0.6)
A 		2.3
(-2.1)
A 		0.6
(-3)
A 		6.5
(0.1)
A 		8.4
(1)
A 		12.2
(3)
A 		12
C 12
(2.3)
A 		3.5
(-2.1)
A 		8.7
(0.6)
A 		1.8
(-3)
A 		13.4
(3)
A 		10.1
(1.3)
A 		12
avr 10.1
(3) 		7
(0.3) 		6.1
(-0.5) 		3.2
(-3) 		9.2
(2.2) 		10
(2.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10488
Sequence Type Exemplar sequence
Representative Public ID T22B11.1 NCBI
Target Description T22B11.1 /REP_DB=WormBase Gene ID /WP=CE17240 /TR=O44564 /GB=AAB94181.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068215 NCBI Caenorhabditis elegans T22B11.1 (T22B11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042287 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4692784:4696817:1 11/11 None
T22B11.1 ENSEMBL cdna:known chromosome:CEL140:IV:4692784:4696817:1 gene:T22B11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4692789-4696823(+) 95.66 100.0
Public Domain and Genome References
Gene Title
Ensembl T22B11.1
Entrez Gene 188725 Entrez gene
SwissProt O44564 EMBL-EBI
WormBase CE36610 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94181 Hypothetical protein T22B11.1 [Caenorhabditis elegans] ref|NP_500616.2| T22B11.1 [Caenorhabditis elegans] 0.0
blast CAE58571 Hypothetical protein CBG01736 [Caenorhabditis briggsae] 1.0E-172
blast CAE65997 Hypothetical protein CBG11188 [Caenorhabditis briggsae] 9.0E-28
Sequence
Target Sequence 
>C. ELEGANS:185250_AT
ggatgcacgtgacactgaaggttgcagtgatagatatgcatatttgaacactacaaattg
gcccaaaaactttgctgaagactgttcgatggataaatgcagagcccgcctattctcacc
tgacaataatatcgatttgttcatcgaagtgagatgggacgcgtggacatcatgccaagg
agatcagccgacaaaaagacgagaaggtcactgttatcttgttcgaggtgaaggatcaat
caatatcgaatcgatgaagtcctcagacaagaaactgtactcgtggatcaagaatctgga
gactgtgttcgatcggaaaccatttgatacgaatggtatacgattgcatagctccctgat
aacctctgtgatattcgataaaccaaaaatcacgggatgctataataagaaggacgagaa
agatggtttgtacgagcgatacgataaagtgtggcggagcatcttcttgccaactcttgg
agtaccagaaaagggagaaaagattcaactgggaaatccattcgaggcttgcctgagata
cgcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCACGTGACACTGAAGGTTGC 275 513 861 Antisense
GATGGATAAATGCAGAGCCCGCCTA 498 407 948 Antisense
CGCCTATTCTCACCTGACAATAATA 467 257 967 Antisense
GGACGCGTGGACATCATGCCAAGGA 212 523 1017 Antisense
AGGTCACTGTTATCTTGTTCGAGGT 7 57 1065 Antisense
TATACGATTGCATAGCTCCCTGATA 510 659 1197 Antisense
CTCCCTGATAACCTCTGTGATATTC 475 233 1212 Antisense
AAAGTGTGGCGGAGCATCTTCTTGC 331 121 1306 Antisense
TCTTCTTGCCAACTCTTGGAGTACC 208 617 1322 Antisense
TGGGAAATCCATTCGAGGCTTGCCT 634 553 1370 Antisense
CGAGGCTTGCCTGAGATACGCGAGA 447 249 1383 Antisense
Sequence Source Affymetrix Proprietary Database