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[185249_at]

Description F38E1.11 /REP_DB=WormBase Gene ID /WP=CE04529 /TR=Q20161 /GB=AAA83478.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 2.6
(-3)
A 		29.8
(3)
A 		26.5
(2.3)
A 		24.2
(1.8)
A 		27
B 6.9
(-2.2)
A 		3.9
(-3)
A 		24.4
(2.5)
A 		26.2
(3)
A 		22
C 16.7
(-0.9)
A 		2.6
(-2.9)
A 		1.6
(-3)
A 		44.8
(3)
P 		43
avr 8.7
(-3) 		12.1
(-2.1) 		17.5
(-0.7) 		31.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.6
(0.6)
A 		2.3
(-3)
A 		4.5
(-2.3)
A 		21.1
(3)
A 		3.7
(-2.6)
A 		17.3
(1.8)
A 		19
B 3.3
(-0.5)
A 		4
(0.4)
A 		6
(3)
A 		4.5
(1)
A 		1.4
(-3)
A 		2.4
(-1.7)
A 		5
C 9.2
(-1.9)
A 		4.2
(-2.7)
A 		37.9
(3)
A 		3
(-2.9)
A 		3.7
(-2.8)
A 		2.5
(-3)
A 		35
avr 8.7
(-0.4) 		3.5
(-2.7) 		16.1
(3) 		9.5
(-0) 		2.9
(-3) 		7.4
(-1) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(-3)
A 		6.5
(2.6)
A 		6.9
(3)
A 		3.5
(-0.5)
A 		6
B 2.2
(-1.4)
A 		1
(-3)
A 		5.6
(3)
A 		5.6
(3)
A 		5
C 5.5
(1.2)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		7.6
(3)
P 		7
avr 2.9
(-2.8) 		2.8
(-3) 		4.4
(0.4) 		5.6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.5
(-0.7)
A 		0.8
(-3)
A 		1
(-2.7)
A 		5.3
(3)
A 		1.1
(-2.6)
A 		4.2
(1.5)
A 		5
B 1.1
(0.3)
A 		1.3
(1.7)
A 		1.5
(3)
A 		1.2
(1)
A 		0.6
(-3)
A 		0.9
(-1)
A 		1
C 3.4
(-1.2)
A 		1.3
(-2.5)
A 		9.7
(3)
A 		0.6
(-3)
A 		1.2
(-2.6)
A 		0.8
(-2.9)
A 		9
avr 2.3
(-0.5) 		1.1
(-2.8) 		4.1
(3) 		2.4
(-0.3) 		1
(-3) 		2
(-1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12279
Sequence Type Exemplar sequence
Representative Public ID F38E1.11 NCBI
Target Description F38E1.11 /REP_DB=WormBase Gene ID /WP=CE04529 /TR=Q20161 /GB=AAA83478.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072759 NCBI Caenorhabditis elegans F38E1.11 (F38E1.11) mRNA, complete cds. 11/11 None
F38E1.11 ENSEMBL cdna:known chromosome:CEL140:V:8381493:8382515:-1 gene:F38E1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8381493-8382516(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E1.11
Entrez Gene 185467 Entrez gene
SwissProt Q20161 EMBL-EBI
WormBase CE04529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83478 Hypothetical protein F38E1.11 [Caenorhabditis elegans] ref|NP_505160.1| F38E1.11 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:185249_AT
atgagtgtcttgcaaatttttataaaatcaattaggtatttggttcaagattacttcaag
aaggaggaggctgttgatgatgaaaatgatgatgttgaagacctggagacacgagacacc
tcatggattatcccttctctctctcctcaattgttgccaattccacaaagtttcatggga
gatgagaaacatgttttcaaaaaaaacttgtgttttggaacaggccagaggtgtaaagtt
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGTGTCTTGCAAATTTTTATAA 573 45 13 Antisense
GGTATTTGGTTCAAGATTACTTCAA 61 505 47 Antisense
GAAGGAGGAGGCTGTTGATGATGAA 255 335 72 Antisense
GATGATGTTGAAGACCTGGAGACAC 295 409 100 Antisense
GAAGACCTGGAGACACGAGACACCT 469 339 109 Antisense
ACGAGACACCTCATGGATTATCCCT 305 93 123 Antisense
TCTCTCCTCAATTGTTGCCAATTCC 66 613 152 Antisense
GTTGCCAATTCCACAAAGTTTCATG 10 441 165 Antisense
ATTCCACAAAGTTTCATGGGAGATG 149 7 172 Antisense
AAACTTGTGTTTTGGAACAGGCCAG 170 125 216 Antisense
GAACAGGCCAGAGGTGTAAAGTTTC 307 349 230 Antisense
Sequence Source Affymetrix Proprietary Database