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[185248_s_at]

Description T09A12.1 /REP_DB=WormBase Gene ID /WP=CE25985 /TR=O61221 /GB=AAC04433.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 24.7
(-2.6)
A 		44.3
(-0.8)
A 		20.2
(-3)
A 		84.8
(3)
M 		65
B 27.1
(-3)
A 		45
(0.6)
P 		56.6
(3)
A 		51.1
(1.9)
A 		30
C 23.2
(-3)
A 		41.4
(3)
M 		29.4
(-1)
A 		40
(2.5)
A 		18
avr 25
(-3) 		43.6
(0.3) 		35.4
(-1.1) 		58.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 24.1
(-2.8)
A 		33.5
(-1.6)
A 		52.2
(0.7)
P 		22.5
(-3)
A 		34.5
(-1.5)
A 		70.2
(3)
P 		48
B 37
(-0.1)
A 		48.1
(2.6)
P 		49.8
(3)
M 		24.8
(-3)
A 		27
(-2.5)
A 		38.3
(0.2)
P 		25
C 4.8
(-3)
A 		52
(1.1)
P 		53.8
(1.2)
A 		55.3
(1.4)
A 		26
(-1.2)
A 		74.1
(3)
P 		69
avr 22
(-3) 		44.5
(0.5) 		51.9
(1.6) 		34.2
(-1.1) 		29.2
(-1.9) 		60.9
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9
(0.1)
A 		9.6
(0.6)
A 		5.3
(-3)
A 		12.4
(3)
M 		7
B 8.6
(-3)
A 		11.1
(0.3)
P 		13.1
(3)
A 		10.9
(0.1)
A 		5
C 7.7
(-1.9)
A 		11.9
(3)
M 		10.3
(1.1)
A 		6.8
(-3)
A 		5
avr 8.4
(-3) 		10.9
(3) 		9.6
(-0.1) 		10
(0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.4
(-3)
A 		11.9
(0.5)
A 		11.4
(0.3)
P 		5.7
(-2.4)
A 		10.4
(-0.2)
A 		17.1
(3)
P 		13
B 12.9
(1)
A 		16
(3)
P 		12.1
(0.5)
M 		6.6
(-3)
A 		11
(-0.2)
A 		14.3
(1.9)
P 		9
C 1.8
(-3)
A 		15.9
(0.7)
P 		13.7
(0.1)
A 		11.1
(-0.6)
A 		8.4
(-1.3)
A 		24.8
(3)
P 		23
avr 6.4
(-3) 		14.6
(1) 		12.4
(-0.1) 		7.8
(-2.3) 		9.9
(-1.3) 		18.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185248_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8668
Sequence Type Exemplar sequence
Representative Public ID T09A12.1 NCBI
Target Description T09A12.1 /REP_DB=WormBase Gene ID /WP=CE25985 /TR=O61221 /GB=AAC04433.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060099(11), NM_068982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060099 NCBI Caenorhabditis elegans C17E4.1 (C17E4.1) mRNA, complete cds. 11/11 A 
NM_068982 NCBI Caenorhabditis elegans T09A12.1 (T09A12.1) mRNA, complete cds. 11/11 None
SNAP00000000944 ENSEMBL cdna:SNAP chromosome:CEL140:I:9415298:9418017:-1 10/11 None
GENEFINDER00000000964 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9415298:9418218:-1 11/11 None
SNAP00000044481 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8245867:8246452:1 9/11 None
GENEFINDER00000044485 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8245887:8246452:1 9/11 None
C17E4.1 ENSEMBL cdna:known chromosome:CEL140:I:9415298:9418218:-1 gene:C17E4.1 11/11 A 
T09A12.1 ENSEMBL cdna:known chromosome:CEL140:IV:8244491:8246452:1 gene:T09A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8244496-8246458(+) 91.36 100.0
Public Domain and Genome References
Gene Title

Ensembl C17E4.1
T09A12.1
Entrez Gene 182724 Entrez gene
188312 Entrez gene
SwissProt Q93232 EMBL-EBI
O61221 EMBL-EBI
WormBase CE08250 Wormbase
CE35002 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 0.0
blast AAC04433 Hypothetical protein T09A12.1 [Caenorhabditis elegans] ref|NP_501383.2| T09A12.1 [Caenorhabditis elegans] 0.0
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 1.0E-106
blast AAC04433 Hypothetical protein T09A12.1 [Caenorhabditis elegans] ref|NP_501383.2| T09A12.1 [Caenorhabditis elegans] 1.0E-103
blast AAC04433 Hypothetical protein T09A12.1 [Caenorhabditis elegans] ref|NP_501383.2| T09A12.1 [Caenorhabditis elegans] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:185248_S_AT
gaaattgaaggtcccgtatctccggcaccacttgagaaggatgaaaataagatggaatgg
aaaattgacgtggatcctgttgtgcttaccggagatcaacggatgtcggatgttctagga
aagatgaaagatttgaaaaagaactctggatggaagaaatgtaaggttctgaaagcaaac
gagaaaactccagacaacgatgatgaaccaactgaagaatctatttatttgagtgcaaga
gtcctccagcttgtcaaaatggaatcattgatctcgaaagaagtatcaaaagaagatcaa
gagattcttcgaggttactgtagatccaacgatcataaggacaaagtggaaccaattttc
gaggctattgcggtgtcaattcttgagaaggttgcgtcgaaaaatgagtttattcggaac
gtttcgattcctggacagttgagaatgtttgcagttgatgagaataagtcaaagttttcg
acaatggctcttctcattgttcgatgtgatttattctactactcttggaataagcctgca
ttggatgatgaagatcaattggatccgacttgggcaaatatgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTGAAGGTCCCGTATCTCCGG 582 349 457 Antisense
GTGCTTACCGGAGATCAACGGATGT 483 465 538 Antisense
TGCAAGAGTCCTCCAGCTTGTCAAA 647 575 690 Antisense
AGAGTCCTCCAGCTTGTCAAAATGG 121 69 694 Antisense
AGTCCTCCAGCTTGTCAAAATGGAA 70 61 696 Antisense
AAGAGATTCTTCGAGGTTACTGTAG 420 153 755 Antisense
GTTACTGTAGATCCAACGATCATAA 696 445 770 Antisense
CAACGATCATAAGGACAAAGTGGAA 404 147 783 Antisense
GACAAAGTGGAACCAATTTTCGAGG 432 361 796 Antisense
GATCAATTGGATCCGACTTGGGCAA 656 421 1009 Antisense
GGATCCGACTTGGGCAAATATGACA 87 513 1017 Antisense
Sequence Source Affymetrix Proprietary Database