[Home] | [Total List]

[185247_at]

Description C13A10.2 /REP_DB=WormBase Gene ID /WP=CE08124 /TR=P91043 /GB=AAB37938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 47      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 344.1
(-0.3)
P 		325.5
(-0.7)
P 		192.2
(-3)
P 		534.2
(3)
P 		342
B 389.9
(-0.1)
P 		304.7
(-2)
P 		257.6
(-3)
P 		533.2
(3)
P 		276
C 320.7
(-1.1)
P 		275.9
(-1.7)
P 		183.5
(-3)
P 		623.4
(3)
P 		440
avr 351.6
(-0.6) 		302
(-1.5) 		211.1
(-3) 		563.6
(3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 562.3
(3)
P 		262.6
(-2.3)
P 		333
(-1)
P 		220.2
(-3)
P 		238.1
(-2.7)
P 		284.2
(-1.9)
P 		342
B 469.5
(2)
P 		399.1
(0.5)
P 		389.1
(0.3)
P 		223.6
(-3)
P 		254.2
(-2.4)
P 		520.4
(3)
P 		297
C 332
(-0.6)
P 		472.8
(1.8)
P 		195.6
(-3)
P 		303.2
(-1.1)
P 		203.3
(-2.9)
P 		539.5
(3)
P 		344
avr 454.6
(3) 		378.2
(0.9) 		305.9
(-1) 		249
(-2.5) 		231.9
(-3) 		448
(2.8) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 125.3
(3)
P 		70.6
(-1.4)
P 		50.2
(-3)
P 		78.2
(-0.8)
P 		75
B 124.3
(3)
P 		75.3
(-1.6)
P 		59.7
(-3)
P 		113.6
(2)
P 		65
C 106.2
(3)
P 		79.3
(-0.8)
P 		63.9
(-3)
P 		105.1
(2.8)
P 		42
avr 118.6
(3) 		75.1
(-1.3) 		57.9
(-3) 		99
(1.1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 103.7
(3)
P 		93.4
(1.7)
P 		72.5
(-0.9)
P 		55.9
(-3)
P 		71.8
(-1)
P 		69.2
(-1.3)
P 		48
B 163.3
(1.6)
P 		132.9
(0.3)
P 		94.5
(-1.4)
P 		59.2
(-3)
P 		103.3
(-1)
P 		194
(3)
P 		135
C 123
(0.4)
P 		144.3
(1.3)
P 		49.8
(-3)
P 		61
(-2.5)
P 		65.8
(-2.3)
P 		180.6
(3)
P 		131
avr 130
(1.8) 		123.5
(1.4) 		72.3
(-2.1) 		58.7
(-3) 		80.3
(-1.5) 		147.9
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4519
Sequence Type Exemplar sequence
Representative Public ID C13A10.2 NCBI
Target Description C13A10.2 /REP_DB=WormBase Gene ID /WP=CE08124 /TR=P91043 /GB=AAB37938.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061554 NCBI Caenorhabditis elegans C13A10.2 (C13A10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000024150 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1357299:1358655:-1 11/11 None
C13A10.2 ENSEMBL cdna:known chromosome:CEL140:II:1357186:1358011:-1 gene:C13A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1357297-1357993(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13A10.2
Entrez Gene 182559 Entrez gene
SwissProt P91043 EMBL-EBI
WormBase CE08124 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37938 Hypothetical protein C13A10.2 [Caenorhabditis elegans] ref|NP_493955.1| C13A10.2 [Caenorhabditis elegans] 2.0E-58
blast AAB37938 Hypothetical protein C13A10.2 [Caenorhabditis elegans] ref|NP_493955.1| C13A10.2 [Caenorhabditis elegans] 5.0E-58
blast CAE62960 Hypothetical protein CBG07175 [Caenorhabditis briggsae] 5.0E-41
blast CAE62960 Hypothetical protein CBG07175 [Caenorhabditis briggsae] 9.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024150 1 47-69
Sequence
Target Sequence 
>C. ELEGANS:185247_AT
gtactgtgtatatttctgcgtcctgctctcaatatgtgccaccacgtcagcactcccatt
ctactcaaaacgggaattggctccgtcactaactctacagagaatcaatgctctcaagga
taccatagatcagttgaatgatattaataaggcaatgaggtgtcgggaaaaagcaaacga
attggcggcaaaaagatcaaaacgaatgatctctccatctctgcgtctctctgaacttat
cgatccattggtggcgggagagagtgtgccaactgagaagacgcagcctgtggaagaaaa
cccacaagaaatcgagcagaatccggaggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTGTGTATATTTCTGCGTCCTG 416 459 15 Antisense
GCACTCCCATTCTACTCAAAACGGG 523 315 64 Antisense
ACGGGAATTGGCTCCGTCACTAACT 581 93 84 Antisense
GCTCCGTCACTAACTCTACAGAGAA 104 299 94 Antisense
AATGCTCTCAAGGATACCATAGATC 519 165 121 Antisense
TCTCTGAACTTATCGATCCATTGGT 21 613 242 Antisense
ATCGATCCATTGGTGGCGGGAGAGA 582 35 253 Antisense
GCGGGAGAGAGTGTGCCAACTGAGA 281 291 268 Antisense
GTGCCAACTGAGAAGACGCAGCCTG 139 479 280 Antisense
AGACGCAGCCTGTGGAAGAAAACCC 215 69 293 Antisense
GAAATCGAGCAGAATCCGGAGGAAT 573 361 322 Antisense
Sequence Source Affymetrix Proprietary Database