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[185246_at]

Description C07A12.2 /REP_DB=WormBase Gene ID /WP=CE03970 /TR=Q17772 /GB=AAK39151.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 51      6grp_total > 35      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 692.3
(-0)
P 		539.1
(-1)
P 		240.6
(-3)
P 		1156.1
(3)
P 		916
B 724
(0.6)
P 		483.7
(-1.6)
P 		335.4
(-3)
P 		988
(3)
P 		653
C 699.8
(0.5)
P 		414.2
(-2)
P 		307.5
(-3)
P 		974.4
(3)
P 		667
avr 705.4
(0.3) 		479
(-1.5) 		294.5
(-3) 		1039.5
(3) 		745

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 797.1
(3)
P 		588.3
(-1.6)
P 		676.7
(0.3)
P 		527
(-3)
P 		537.2
(-2.8)
P 		575
(-1.9)
P 		270
B 600.5
(-0.4)
P 		635
(0.9)
P 		692
(3)
P 		653.1
(1.5)
P 		532.6
(-3)
P 		599
(-0.5)
P 		159
C 566.8
(0.1)
P 		711.9
(3)
P 		593.6
(0.6)
P 		579.3
(0.3)
P 		414.9
(-3)
P 		590.6
(0.5)
P 		297
avr 654.8
(3) 		645.1
(2.6) 		654.1
(3) 		586.5
(0.4) 		494.9
(-3) 		588.2
(0.5) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 252.1
(3)
P 		117
(-1.3)
P 		62.9
(-3)
P 		169.2
(0.4)
P 		189
B 230.9
(3)
P 		119.5
(-1.4)
P 		77.7
(-3)
P 		210.5
(2.2)
P 		153
C 231.6
(3)
P 		119.1
(-2.4)
P 		107.2
(-3)
P 		164.3
(-0.2)
P 		124
avr 238.2
(3) 		118.5
(-1.6) 		82.6
(-3) 		181.3
(0.8) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 146.9
(-1.9)
P 		209.2
(3)
P 		147.4
(-1.9)
P 		133.6
(-3)
P 		162.1
(-0.7)
P 		140
(-2.5)
P 		76
B 208.9
(1.4)
P 		211.4
(1.7)
P 		168
(-3)
P 		173
(-2.5)
P 		216.4
(2.3)
P 		223.3
(3)
P 		55
C 210.1
(2.6)
P 		217.2
(3)
P 		151.1
(-0.9)
P 		116.5
(-3)
P 		134.3
(-1.9)
P 		197.7
(1.8)
P 		101
avr 188.6
(1) 		212.6
(3) 		155.5
(-1.8) 		141
(-3) 		170.9
(-0.5) 		187
(0.9) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16416
Sequence Type Exemplar sequence
Representative Public ID C07A12.2 NCBI
Target Description C07A12.2 /REP_DB=WormBase Gene ID /WP=CE03970 /TR=Q17772 /GB=AAK39151.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076379 NCBI Caenorhabditis elegans C07A12.2 (C07A12.2) mRNA, complete cds. 11/11 None
SNAP00000032347 ENSEMBL cdna:SNAP chromosome:CEL140:X:4544846:4545388:1 11/11 None
GENEFINDER00000032354 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4544846:4545388:1 11/11 None
C07A12.2 ENSEMBL cdna:known chromosome:CEL140:X:4544846:4545388:1 gene:C07A12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4544846-4545389(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07A12.2
Entrez Gene 180726 Entrez gene
SwissProt Q17772 EMBL-EBI
WormBase CE03970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39151 Hypothetical protein C07A12.2 [Caenorhabditis elegans] ref|NP_508780.1| C07A12.2 [Caenorhabditis elegans] 2.0E-31
blast CAE68608 Hypothetical protein CBG14486 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508780.1 1 5-22
C07A12.2 1 5-22
SNAP00000032347 1 5-22
GENEFINDER00000032354 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:185246_AT
atgtccatcaaggtccttatttttgttgctctccttgtcatcgccttccagtttgccagc
gtcaccgaggctcgaaacgctccaccgatgacccgtattcaggaagtcttccgcagtctc
atggcaccagaagaaattcgtgggaaaaagtactaccagcagtacgtcccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCCATCAAGGTCCTTATTTTTG 234 49 13 Antisense
AGGTCCTTATTTTTGTTGCTCTCCT 8 59 23 Antisense
AGCGTCACCGAGGCTCGAAACGCTC 592 79 70 Antisense
TCCACCGATGACCCGTATTCAGGAA 600 589 93 Antisense
GACCCGTATTCAGGAAGTCTTCCGC 203 381 102 Antisense
TTCAGGAAGTCTTCCGCAGTCTCAT 454 687 110 Antisense
TCCGCAGTCTCATGGCACCAGAAGA 98 597 122 Antisense
GCAGTCTCATGGCACCAGAAGAAAT 78 311 125 Antisense
TGGCACCAGAAGAAATTCGTGGGAA 178 545 134 Antisense
TTCGTGGGAAAAAGTACTACCAGCA 645 693 149 Antisense
GTACTACCAGCAGTACGTCCCAAAT 431 459 162 Antisense
Sequence Source Affymetrix Proprietary Database