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[185245_at]

Description K09H11.4 /REP_DB=WormBase Gene ID /WP=CE12054 /TR=O01586 /GB=AAB52267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 32
(-0.3)
A 		30.5
(-0.5)
A 		2.2
(-3)
A 		68.9
(3)
A 		67
B 18.6
(-0.3)
A 		19.1
(-0.1)
A 		31.5
(3)
A 		7.7
(-3)
A 		24
C 40.5
(1.2)
A 		46.3
(3)
A 		41.7
(1.6)
A 		26.9
(-3)
A 		19
avr 30.4
(0.4) 		32
(1.4) 		25.1
(-3) 		34.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 31.3
(3)
A 		12.1
(-1.1)
A 		16.1
(-0.2)
A 		9.7
(-1.6)
A 		20.8
(0.8)
A 		3.1
(-3)
A 		28
B 33.7
(3)
A 		3.7
(-2.8)
A 		2.4
(-3)
A 		15.2
(-0.5)
A 		18.5
(0.1)
A 		10.3
(-1.5)
A 		31
C 16.1
(1.1)
A 		11.2
(-0.9)
A 		17.2
(1.6)
A 		6.1
(-3)
A 		17.9
(1.9)
A 		20.6
(3)
A 		15
avr 27
(3) 		9
(-3) 		11.9
(-2) 		10.3
(-2.6) 		19.1
(0.4) 		11.3
(-2.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.7
(3)
A 		6.6
(0.2)
A 		0.6
(-3)
A 		10.1
(2.1)
A 		11
B 5.9
(1.5)
A 		4.7
(0.3)
A 		7.3
(3)
A 		1.6
(-3)
A 		6
C 13.4
(2.3)
A 		13.3
(2.3)
A 		14.5
(3)
A 		4.5
(-3)
A 		10
avr 10.3
(3) 		8.2
(0.4) 		7.5
(-0.4) 		5.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.8
(2.5)
A 		4.3
(0.8)
A 		3.5
(-0.1)
A 		2.5
(-1.1)
A 		6.3
(3)
A 		0.8
(-3)
A 		6
B 11.7
(3)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		4
(-1.2)
A 		7.5
(0.7)
A 		3.8
(-1.3)
A 		11
C 6
(2.1)
A 		3.4
(-0.7)
A 		4.4
(0.4)
A 		1.2
(-3)
A 		5.8
(1.8)
A 		6.9
(3)
A 		6
avr 7.8
(3) 		3
(-2.5) 		2.8
(-2.8) 		2.6
(-3) 		6.5
(1.5) 		3.8
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11466
Sequence Type Exemplar sequence
Representative Public ID K09H11.4 NCBI
Target Description K09H11.4 /REP_DB=WormBase Gene ID /WP=CE12054 /TR=O01586 /GB=AAB52267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072103(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072103 NCBI Caenorhabditis elegans K09H11.4 (K09H11.4) mRNA, complete cds. 11/11 None
SNAP00000008371 ENSEMBL cdna:SNAP chromosome:CEL140:V:5725674:5729140:-1 11/11 None
GENEFINDER00000008382 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5725674:5732600:-1 11/11 None
K09H11.4 ENSEMBL cdna:known chromosome:CEL140:V:5725674:5729140:-1 gene:K09H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5725673-5729140(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H11.4
Entrez Gene 187244 Entrez gene
SwissProt O01586 EMBL-EBI
WormBase CE12054 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504504 K09H11.4 [Caenorhabditis elegans] gb|AAB52267.1| Hypothetical protein K09H11.4 [Caenorhabditis elegans] 0.0
blast CAE64581 Hypothetical protein CBG09334 [Caenorhabditis briggsae] 1.0E-102
blast CAE64581 Hypothetical protein CBG09334 [Caenorhabditis briggsae] 6.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185245_AT
ttttgcgggtggtccttggaactcacctggaggatctgccggacgccaagcagcgcctgg
agacgacgttggctcgagtgaagaccgatctggccaagacggacgacgtgttcagcaaca
aaacgcatctactcctgcatccgacaattcgagttcccatgatgattcttccgaacggag
acattccaccagcgatcacagcaaggaaaatgagagaggaagaaaggaagatggaagaga
aaaagacgatttcagagaagatcatggaagagaagatcatggaaaaagtgaagttccaga
aaaagtagaacatgaacaacatccaccacaatctcatggatccccacatccaggaccaca
atatcaagggccaccacctcgaaaagagttcccaactcctggaagatttgttacaaatat
tcgagccaagaaatcaggagagatccttgatgcaacaactgctctacctacaacatcttc
tccaccaatactatctgcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGCGGGTGGTCCTTGGAACTCA 546 677 1290 Antisense
TGGAACTCACCTGGAGGATCTGCCG 503 547 1306 Antisense
CAAGCAGCGCCTGGAGACGACGTTG 476 185 1336 Antisense
GACCGATCTGGCCAAGACGGACGAC 36 381 1372 Antisense
AACAAAACGCATCTACTCCTGCATC 572 133 1406 Antisense
TGCATCCGACAATTCGAGTTCCCAT 577 577 1425 Antisense
GAGTTCCCATGATGATTCTTCCGAA 22 399 1440 Antisense
TTCCGAACGGAGACATTCCACCAGC 304 693 1458 Antisense
GACCACAATATCAAGGGCCACCACC 164 383 1643 Antisense
GCCACCACCTCGAAAAGAGTTCCCA 6 279 1659 Antisense
TTCTCCACCAATACTATCTGCAATC 528 693 1767 Antisense
Sequence Source Affymetrix Proprietary Database