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[185244_at]

Description Y51A2D.12 /REP_DB=WormBase Gene ID /WP=CE19208 /TR=Q9XXQ5 /GB=CAA16409.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 05      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 45.9
(0.2)
P 		18.6
(-3)
A 		25.6
(-2.2)
A 		70.4
(3)
P 		52
B 37.5
(-3)
A 		42.3
(-2.3)
A 		79.9
(3)
A 		49.6
(-1.3)
A 		42
C 60.8
(2.9)
P 		57.2
(2.5)
A 		14.4
(-3)
A 		61.2
(3)
A 		47
avr 48.1
(-0.5) 		39.4
(-3) 		40
(-2.8) 		60.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 36.9
(-0.7)
A 		5.7
(-3)
A 		86.8
(3)
M 		46.9
(0)
A 		25.8
(-1.5)
P 		27
(-1.4)
A 		81
B 63.6
(3)
P 		54.1
(0.9)
A 		36.2
(-3)
A 		42.2
(-1.7)
A 		41.8
(-1.8)
P 		48.9
(-0.2)
P 		27
C 72.1
(3)
P 		58.7
(1.7)
A 		45.2
(0.3)
A 		13.1
(-2.9)
A 		52.5
(1)
P 		12.5
(-3)
A 		60
avr 57.5
(3) 		39.5
(-0.9) 		56.1
(2.7) 		34.1
(-2) 		40
(-0.8) 		29.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.7
(3)
P 		4
(-3)
A 		6.7
(-1.7)
A 		10.3
(-0)
P 		13
B 12
(-1.8)
A 		10.4
(-3)
A 		18.5
(3)
A 		10.6
(-2.9)
A 		8
C 20.1
(3)
P 		16.4
(1.5)
A 		5
(-3)
A 		10.3
(-0.9)
A 		15
avr 16.3
(3) 		10.3
(-2.8) 		10.1
(-3) 		10.4
(-2.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 6.8
(-1.3)
A 		2
(-3)
A 		18.9
(3)
M 		11.9
(0.5)
A 		7.8
(-0.9)
P 		6.6
(-1.4)
A 		17
B 22.1
(3)
P 		18
(1.2)
A 		8.8
(-3)
A 		11.2
(-1.9)
A 		17
(0.7)
P 		18.2
(1.2)
P 		13
C 26.7
(3)
P 		17.9
(0.8)
A 		11.5
(-0.8)
A 		2.6
(-3)
A 		17
(0.6)
P 		4.2
(-2.6)
A 		24
avr 18.5
(3) 		12.6
(-0.6) 		13.1
(-0.3) 		8.6
(-3) 		13.9
(0.2) 		9.7
(-2.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185244_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13226
Sequence Type Exemplar sequence
Representative Public ID Y51A2D.12 NCBI
Target Description Y51A2D.12 /REP_DB=WormBase Gene ID /WP=CE19208 /TR=Q9XXQ5 /GB=CAA16409.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075230(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075230 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-34) (srg-34) mRNA, complete cds. 11/11 None
GENEFINDER00000034263 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18564794:18567455:-1 11/11 None
Y51A2D.12 ENSEMBL cdna:known chromosome:CEL140:V:18564794:18567455:-1 gene:Y51A2D.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034250 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18564793-18567455(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-34
Ensembl Y51A2D.12
Entrez Gene 190136 Entrez gene
SwissProt Q9XXQ5 EMBL-EBI
WormBase CE19208 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16409 Hypothetical protein Y51A2D.12 [Caenorhabditis elegans] ref|NP_507631.1| Serpentine Receptor, class G (gamma) family member (srg-34) [Caenorhabditis elegans] 0.0
blast CAE67415 Hypothetical protein CBG12903 [Caenorhabditis briggsae] 1.0E-147
blast CAA94216 Hypothetical protein K04C1.6 [Caenorhabditis elegans] emb|CAB04583.1| Hypothetical protein K04C1.6 [Caenorhabditis elegans] ref|NP_510370.1| Serpentine Receptor, class G (gamma) family member (srg-36) [Caenorhabditis elegans] 3.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507631.1 7 10-32,44-66,103-122,135-157,181-203,223-245,265-287
Y51A2D.12 7 10-32,44-66,103-122,135-157,181-203,223-245,265-287
GENEFINDER00000034263 7 10-32,44-66,103-122,135-157,181-203,223-245,265-287
Sequence
Target Sequence 
>C. ELEGANS:185244_AT
cggtcatttttcggttatagctctactgctaatttttacatcgacactacttatggtcgg
agcaatatttactattttctgatgccggcgctaatatttcttacgtgttttaatattgtt
ttcaatgttttggccgggattcggttgtacaacatgaaaaaaaaaggtgtaaaagtcccg
gaaaccagtctattctcaatggctttcacggtttttgtcattgacctatttctgacgagc
cttaccgtatccaactactacctgaccaacttggcaattggttcggactctgactttgtg
aaattcttgctccgatggattccactgctgacaccgtttgctagcgatgctctgacgttg
actcacccgtttttgctgctgtattttagtaaaactgttcgtcgaaaatgcgcggaatct
aatcgactattggaaaaattcaagaatcacagattttttgccgagagcaacagcaatatt
gtagtaatgtccctgccgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTCATTTTTCGGTTATAGCTCTA 693 239 487 Antisense
ATGCCGGCGCTAATATTTCTTACGT 280 41 568 Antisense
GGCTTTCACGGTTTTTGTCATTGAC 586 537 687 Antisense
CATTGACCTATTTCTGACGAGCCTT 572 217 705 Antisense
TTACCGTATCCAACTACTACCTGAC 481 679 728 Antisense
AATTGGTTCGGACTCTGACTTTGTG 41 179 762 Antisense
GTGAAATTCTTGCTCCGATGGATTC 485 479 784 Antisense
ACTGCTGACACCGTTTGCTAGCGAT 214 99 810 Antisense
TGCTAGCGATGCTCTGACGTTGACT 317 555 825 Antisense
CACCCGTTTTTGCTGCTGTATTTTA 55 201 850 Antisense
TATTGTAGTAATGTCCCTGCCGAAG 320 665 963 Antisense
Sequence Source Affymetrix Proprietary Database