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[185242_at]

Description Y105C5B.7 /REP_DB=WormBase Gene ID /WP=CE24083 /TR=Q9U314 /GB=CAB60314.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 0.5
(-3)
A 		1.1
(-2.9)
A 		2.4
(-2.8)
A 		46.9
(3)
A 		46
B 1
(-3)
A 		30.7
(3)
A 		16.9
(0.2)
A 		3.4
(-2.5)
A 		30
C 2.1
(-3)
A 		1.3
(-3)
A 		13.6
(-2.3)
A 		105.8
(3)
P 		105
avr 1.2
(-3) 		11
(-1.8) 		11
(-1.8) 		52
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 3.2
(-3)
A 		30
(-1)
A 		85.3
(3)
P 		57.7
(1)
P 		17.6
(-1.9)
A 		51.3
(0.5)
M 		82
B 16.2
(-3)
A 		44.2
(-0.9)
P 		68.8
(0.9)
P 		45.9
(-0.8)
P 		25.9
(-2.3)
P 		96.3
(3)
P 		80
C 15.9
(-3)
A 		61.7
(0.6)
P 		49.4
(-0.3)
M 		49.7
(-0.3)
A 		31.4
(-1.8)
P 		91.7
(3)
P 		76
avr 11.8
(-3) 		45.3
(-0) 		67.8
(1.9) 		51.1
(0.5) 		25
(-1.8) 		79.8
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.2
(-3)
A 		0.2
(-3)
A 		0.6
(-2.6)
A 		6.9
(3)
A 		7
B 0.3
(-3)
A 		7.6
(3)
A 		3.9
(-0)
A 		0.7
(-2.7)
A 		7
C 0.7
(-2.9)
A 		0.4
(-3)
A 		4.7
(-1.5)
A 		17.8
(3)
P 		17
avr 0.4
(-3) 		2.7
(-1.3) 		3.1
(-1) 		8.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 0.6
(-3)
A 		10.7
(0.4)
A 		18.6
(3)
P 		14.6
(1.7)
P 		5.3
(-1.4)
A 		12.5
(1)
M 		18
B 5.6
(-3)
A 		14.7
(-1.2)
P 		16.7
(-0.8)
P 		12.2
(-1.7)
P 		10.5
(-2)
P 		35.9
(3)
P 		30
C 5.9
(-3)
A 		18.8
(0.1)
P 		12.6
(-1.4)
M 		10
(-2)
A 		10.2
(-2)
P 		30.7
(3)
P 		25
avr 4
(-3) 		14.7
(-0.1) 		16
(0.2) 		12.3
(-0.8) 		8.7
(-1.7) 		26.4
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8631
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.7 NCBI
Target Description Y105C5B.7 /REP_DB=WormBase Gene ID /WP=CE24083 /TR=Q9U314 /GB=CAB60314.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070495 NCBI Caenorhabditis elegans Y105C5B.7 (Y105C5B.7) mRNA, complete cds. 11/11 None
GENEFINDER00000018423 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15914959:15919094:-1 11/11 None
Y105C5B.7 ENSEMBL cdna:known chromosome:CEL140:IV:15914959:15919196:-1 gene:Y105C5B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018389 5/11 Cross Hyb Matching Probes None
SNAP00000018390 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15914964-15919202(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.7
Entrez Gene 190890 Entrez gene
SwissProt Q9U314 EMBL-EBI
WormBase CE24083 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258828_AT serine/threonine protein phosphatase family protein at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60314 Hypothetical protein Y105C5B.7 [Caenorhabditis elegans] ref|NP_502896.1| Y105C5B.7 [Caenorhabditis elegans] 0.0
blast CAB54350 Hypothetical protein Y105C5B.3 [Caenorhabditis elegans] ref|NP_502892.2| Y105C5B.3 [Caenorhabditis elegans] 0.0
blast CAB54350 Hypothetical protein Y105C5B.3 [Caenorhabditis elegans] ref|NP_502892.2| Y105C5B.3 [Caenorhabditis elegans] 1.0E-176
blast CAE57394 Hypothetical protein CBG00344 [Caenorhabditis briggsae] 1.0E-173
blast CAE57394 Hypothetical protein CBG00344 [Caenorhabditis briggsae] 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.0E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185242_AT
tatgttccttatatgcttcaactatggattcgttttattgcaataaactctgaatattac
gctgaagcaatgtctactgaaacccaggctcaatataaatggcttcaggaggatcttgca
caaaataagaaaaaatggacaattgtaatgttccatagaccatggtattgttcaagtaaa
aagaagaaaggatgtaatgatgatcaagatattctatcaagagaaggtgataagaaaaag
tttccaggattagaggaattattgaatcagtataaagttgatatggtattatatggacat
aagcatacttacgagagaatgtggccaatttataataagaatccattcaaatcggctgat
cctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTCCTTATATGCTTCAACTAT 346 655 565 Antisense
TATGCTTCAACTATGGATTCGTTTT 697 651 576 Antisense
ACTATGGATTCGTTTTATTGCAATA 269 95 585 Antisense
TTACGCTGAAGCAATGTCTACTGAA 206 681 621 Antisense
GAAGCAATGTCTACTGAAACCCAGG 310 341 628 Antisense
GCAATGTCTACTGAAACCCAGGCTC 25 323 631 Antisense
GTCTACTGAAACCCAGGCTCAATAT 583 469 636 Antisense
ACCCAGGCTCAATATAAATGGCTTC 348 91 646 Antisense
ATGGCTTCAGGAGGATCTTGCACAA 542 51 663 Antisense
GAATCCATTCAAATCGGCTGATCCT 196 331 903 Antisense
ATCCATTCAAATCGGCTGATCCTGG 609 39 905 Antisense
Sequence Source Affymetrix Proprietary Database