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[185241_at]

Description F28B12.1 /REP_DB=WormBase Gene ID /WP=CE02702 /TR=Q19850 /GB=AAK31506.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 53      6grp_total > 51      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 130.4
(-0.9)
M 		82.2
(-3)
A 		81.7
(-3)
A 		223
(3)
P 		141
B 111.8
(-2.5)
P 		104.1
(-2.8)
A 		99.9
(-3)
A 		250.7
(3)
P 		151
C 79.7
(-3)
A 		79.6
(-3)
A 		99.9
(-2.3)
P 		252.7
(3)
P 		173
avr 107.3
(-2.3) 		88.6
(-3) 		93.8
(-2.8) 		242.1
(3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 78.9
(0.2)
P 		110.7
(1.8)
A 		132.9
(3)
P 		121.4
(2.4)
P 		80.5
(0.3)
A 		18
(-3)
A 		115
B 104.9
(-1.8)
P 		159.8
(1.9)
P 		175.9
(3)
P 		118.3
(-0.9)
P 		124
(-0.5)
P 		86.3
(-3)
P 		90
C 107.8
(-2)
P 		122.2
(-1.4)
P 		169.1
(0.6)
P 		227.7
(3)
A 		83.9
(-3)
P 		139.2
(-0.7)
P 		144
avr 97.2
(-1.8) 		130.9
(0.8) 		159.3
(3) 		155.8
(2.7) 		96.1
(-1.9) 		81.2
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 47.5
(3)
M 		17.8
(-3)
A 		21.4
(-2.3)
A 		32.6
(-0)
P 		30
B 35.7
(-0.5)
P 		25.7
(-2.5)
A 		23.2
(-3)
A 		53.4
(3)
P 		30
C 26.4
(-1.9)
A 		22.9
(-3)
A 		34.8
(0.6)
P 		42.6
(3)
P 		20
avr 36.5
(1.2) 		22.1
(-3) 		26.5
(-1.7) 		42.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 14.5
(-1.3)
P 		39.4
(3)
A 		28.9
(1.2)
P 		30.8
(1.5)
P 		24.3
(0.4)
A 		4.4
(-3)
A 		35
B 36.5
(-1.6)
P 		53.2
(3)
P 		42.7
(0.1)
P 		31.3
(-3)
P 		50.4
(2.2)
P 		32.2
(-2.8)
P 		22
C 39.9
(0.9)
P 		37.3
(0.1)
P 		43
(1.9)
P 		45.8
(2.8)
A 		27.1
(-3)
P 		46.6
(3)
P 		20
avr 30.3
(-2) 		43.3
(3) 		38.2
(1) 		36
(0.2) 		33.9
(-0.6) 		27.7
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4854
Sequence Type Exemplar sequence
Representative Public ID F28B12.1 NCBI
Target Description F28B12.1 /REP_DB=WormBase Gene ID /WP=CE02702 /TR=Q19850 /GB=AAK31506.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062786 NCBI Caenorhabditis elegans F28B12.1 (F28B12.1) mRNA, complete cds. 11/11 None
F28B12.1 ENSEMBL cdna:known chromosome:CEL140:II:5940896:5943650:1 gene:F28B12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017908 3/11 Cross Hyb Matching Probes None
SNAP00000017909 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017910 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5940892-5943647(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B12.1
Entrez Gene 185046 Entrez gene
SwissProt Q19850 EMBL-EBI
WormBase CE02702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31506 Hypothetical protein F28B12.1 [Caenorhabditis elegans] ref|NP_495187.1| F28B12.1 [Caenorhabditis elegans] 1.0E-133
blast CAE59226 Hypothetical protein CBG02545 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:185241_AT
attgattctctagtcctgcaaatggactgcctgaacttgattgccactttgacaaagaca
aatcttgtcgtcttgctagtgatcaagagctgggtaatcattggcgaaatggattttgga
ggacgccctcctcctccaatggatgacacttattttccaagtcttctcaaaaaggatatt
tggtctcagatcgaaaacaatacaatcaactttccagcagatattcgtggatggctcaag
aaactgaccgacgagaaagatctcattgataactattctcttgaaaaacaaccagctata
aatcaatggtttgctgaaactgattttgtgattcgaactcttcgatgtgtcaatcttcct
gaattggtagaacattatgaggatcagctgactgcacaaaaaatctacttggaaaaaatc
gatcaccggagtggaattcttaaatatttgattgagagactcgaaatggctgtagcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGATTCTCTAGTCCTGCAAATGG 231 3 196 Antisense
TGCCTGAACTTGATTGCCACTTTGA 23 585 223 Antisense
AATCTTGTCGTCTTGCTAGTGATCA 295 169 256 Antisense
TGGATTTTGGAGGACGCCCTCCTCC 406 551 305 Antisense
CTCCTCCTCCAATGGATGACACTTA 22 235 323 Antisense
GACACTTATTTTCCAAGTCTTCTCA 672 359 340 Antisense
AACAATACAATCAACTTTCCAGCAG 312 135 391 Antisense
GGATGGCTCAAGAAACTGACCGACG 536 513 424 Antisense
CTGATTTTGTGATTCGAACTCTTCG 401 239 515 Antisense
AACTCTTCGATGTGTCAATCTTCCT 332 141 531 Antisense
GAGAGACTCGAAATGGCTGTAGCAG 414 395 649 Antisense
Sequence Source Affymetrix Proprietary Database