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[185240_at]

Description H05C05.1 /REP_DB=WormBase Gene ID /WP=CE19481 /TR=Q9TXU2 /GB=AAK29840.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 97.6
(3)
A 		70.3
(0.8)
A 		24.7
(-3)
A 		85.9
(2)
A 		73
B 111.1
(3)
A 		59.4
(-0.8)
A 		76.8
(0.5)
A 		28.4
(-3)
A 		83
C 115.5
(3)
A 		105.7
(2.2)
A 		92
(1.1)
A 		42.8
(-3)
A 		73
avr 108.1
(3) 		78.5
(-0.2) 		64.5
(-1.7) 		52.4
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 97.4
(2.8)
A 		63.3
(-2.3)
A 		82.1
(0.5)
A 		58.3
(-3)
A 		99
(3)
A 		78.7
(0)
A 		41
B 82.3
(0.1)
A 		78.2
(-0.3)
A 		69.4
(-1.2)
A 		110.8
(3)
A 		51.9
(-3)
A 		87.4
(0.6)
A 		59
C 65.2
(0.5)
A 		68.3
(0.7)
A 		65.6
(0.5)
A 		107.9
(3)
A 		5.9
(-3)
A 		58.3
(0.1)
A 		102
avr 81.6
(1.4) 		69.9
(-0.4) 		72.4
(0) 		92.3
(3) 		52.3
(-3) 		74.8
(0.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 35.6
(3)
A 		15.3
(-1.2)
A 		6.5
(-3)
A 		12.6
(-1.7)
A 		29
B 35.4
(3)
A 		14.7
(-1.2)
A 		17.8
(-0.6)
A 		6.1
(-3)
A 		29
C 38.2
(3)
A 		30.4
(1.5)
A 		32.1
(1.8)
A 		7.2
(-3)
A 		31
avr 36.4
(3) 		20.1
(-0.5) 		18.8
(-0.8) 		8.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18
(-1.7)
A 		22.5
(0.1)
A 		17.9
(-1.8)
A 		14.8
(-3)
A 		29.9
(3)
A 		19.2
(-1.3)
A 		15
B 28.6
(1.5)
A 		26
(0.5)
A 		16.9
(-3)
A 		29.3
(1.7)
A 		21.1
(-1.4)
A 		32.6
(3)
A 		16
C 24.2
(3)
A 		20.9
(2.1)
A 		16.7
(1)
A 		21.7
(2.3)
A 		1.9
(-3)
A 		19.5
(1.7)
A 		22
avr 23.6
(2.8) 		23.1
(2.4) 		17.2
(-3) 		21.9
(1.3) 		17.6
(-2.6) 		23.8
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6041
Sequence Type Exemplar sequence
Representative Public ID H05C05.1 NCBI
Target Description H05C05.1 /REP_DB=WormBase Gene ID /WP=CE19481 /TR=Q9TXU2 /GB=AAK29840.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181975(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181975 NCBI Caenorhabditis elegans H05C05.1a (H05C05.1) mRNA, complete cds. 11/11 None
SNAP00000036239 ENSEMBL cdna:SNAP chromosome:CEL140:III:2947108:2963187:1 11/11 None
GENEFINDER00000036246 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2953678:2961291:1 11/11 None
H05C05.1a ENSEMBL cdna:known chromosome:CEL140:III:2949611:2960564:1 gene:H05C05.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065242 5/11 Cross Hyb Matching Probes None
H05C05.1b 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
259329 2 1 NM_181975 185240_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2950701-2960564(+) 94.53 100.0
Public Domain and Genome References
Ensembl H05C05.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK29840 Hypothetical protein H05C05.1a [Caenorhabditis elegans] ref|NP_871704.2| H05C05.1a [Caenorhabditis elegans] 0.0
blast AAK29840 Hypothetical protein H05C05.1a [Caenorhabditis elegans] ref|NP_871704.2| H05C05.1a [Caenorhabditis elegans] 1.0E-154
blast CAE74678 Hypothetical protein CBG22485 [Caenorhabditis briggsae] 3.0E-94
blast CAE74678 Hypothetical protein CBG22485 [Caenorhabditis briggsae] 7.0E-72
blast CAE74678 Hypothetical protein CBG22485 [Caenorhabditis briggsae] 1.0E-39
blast AAN63400 Hypothetical protein H05C05.1b [Caenorhabditis elegans] ref|NP_497643.2| H05C05.1b [Caenorhabditis elegans] 3.0E-16
Sequence
Target Sequence 
>C. ELEGANS:185240_AT
gatcagtcatcatcccagagatatcagcagcaacgacgttcaagtatgtcggctggatca
gaatctggtggacgaggtggtggtggtggaggtcagaagccatcatcatcacgtggaagt
gcacgtggaatgcgtggtggtggaggacaccgaaagagtggaggagatgatgatcggcag
cagcagcagcaccagaatagtattgctgagaagccggaaggatcctcctctggatctgct
actgagaagagcaaagagattgaggcgaagagcaaaaaggatgacacaaaaaagccgctg
gagccatcagctgcttcatctgatccttcatcctcatccaccacaaccaccactatcaca
aaagagccaccaactcaatcggcttctgcttctggtgctgctgctgctgctgctgcttct
gctcaaccatcagaatcatcatctgctactgcagcttctggcgacaacggggattcggca
caaaattcgtcgtcaacaccgaaaaagaatgcgaaaaaggagaagaagaagcagaagcgt
gaagcacggcagacaccgttgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGTCATCATCCCAGAGATATC 287 421 1897 Antisense
CGTTCAAGTATGTCGGCTGGATCAG 610 245 1933 Antisense
GGAGGTCAGAAGCCATCATCATCAC 42 517 1984 Antisense
TGAGAAGCCGGAAGGATCCTCCTCT 392 569 2103 Antisense
CTCCTCTGGATCTGCTACTGAGAAG 453 235 2121 Antisense
AAAAGCCGCTGGAGCCATCAGCTGC 306 131 2186 Antisense
AAGAGCCACCAACTCAATCGGCTTC 441 153 2258 Antisense
TCATCTGCTACTGCAGCTTCTGGCG 240 621 2335 Antisense
GCTTCTGGCGACAACGGGGATTCGG 612 303 2350 Antisense
GGGATTCGGCACAAAATTCGTCGTC 71 497 2366 Antisense
GAAGCACGGCAGACACCGTTGGGAA 430 341 2437 Antisense
Sequence Source Affymetrix Proprietary Database