[Home] | [Total List]

[185239_at]

Description Y49E10.25 /REP_DB=WormBase Gene ID /WP=CE22240 /TR=Q9XTT1 /GB=CAB11568.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 4.5
(-3)
A 		25.7
(1.4)
A 		33.3
(3)
A 		28.6
(2)
A 		29
B 6.8
(-1.6)
A 		13.8
(3)
A 		7.3
(-1.3)
A 		4.7
(-3)
A 		9
C 30.9
(1.1)
A 		42.2
(3)
A 		6.2
(-3)
A 		13.1
(-1.9)
A 		36
avr 14.1
(-3) 		27.2
(3) 		15.6
(-2.3) 		15.5
(-2.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 8.1
(-2.1)
A 		6.3
(-2.5)
A 		3.9
(-3)
A 		11.4
(-1.5)
A 		32.8
(2.9)
A 		33.5
(3)
A 		30
B 6.2
(-2.7)
A 		12.2
(-1.9)
A 		7.2
(-2.6)
A 		22.3
(-0.5)
A 		48.2
(3)
A 		4.2
(-3)
A 		44
C 15.8
(3)
A 		3.1
(-3)
A 		14
(2.1)
A 		4.5
(-2.3)
A 		3.2
(-3)
A 		11.4
(0.9)
A 		13
avr 10
(-2.2) 		7.2
(-3) 		8.4
(-2.7) 		12.7
(-1.4) 		28.1
(3) 		16.4
(-0.4) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.7
(-3)
A 		5.6
(0.3)
A 		8.7
(3)
A 		4.2
(-0.9)
A 		7
B 2.2
(0)
A 		3.4
(3)
A 		1.7
(-1.3)
A 		1
(-3)
A 		2
C 10.2
(1.9)
A 		12.1
(3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		10
avr 4.7
(-0.1) 		7
(3) 		4.2
(-0.7) 		2.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-2.5)
A 		2.2
(-2.1)
A 		0.8
(-3)
A 		2.9
(-1.6)
A 		9.9
(3)
A 		8.2
(1.9)
A 		9
B 2.2
(-2.8)
A 		4.1
(-2.1)
A 		1.7
(-2.9)
A 		5.9
(-1.5)
A 		19.6
(3)
A 		1.5
(-3)
A 		18
C 5.8
(3)
A 		0.9
(-3)
A 		3.6
(0.3)
A 		0.9
(-3)
A 		1
(-2.9)
A 		3.8
(0.6)
A 		5
avr 3.2
(-2.1) 		2.4
(-2.7) 		2
(-3) 		3.2
(-2.1) 		10.2
(3) 		4.5
(-1.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6743
Sequence Type Exemplar sequence
Representative Public ID Y49E10.25 NCBI
Target Description Y49E10.25 /REP_DB=WormBase Gene ID /WP=CE22240 /TR=Q9XTT1 /GB=CAB11568.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067229 NCBI Caenorhabditis elegans Y49E10.25 (Y49E10.25) mRNA, complete cds. 11/11 None
GENEFINDER00000016113 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12488554:12491294:-1 11/11 None
Y49E10.25 ENSEMBL cdna:known chromosome:CEL140:III:12488554:12491959:-1 gene:Y49E10.25 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016093 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12488549-12491221(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49E10.25
Entrez Gene 190072 Entrez gene
SwissProt Q9XTT1 EMBL-EBI
WormBase CE37802 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB11568 Hypothetical protein Y49E10.25 [Caenorhabditis elegans] ref|NP_499630.2| Y49E10.25 [Caenorhabditis elegans] 0.0
blast CAB11568 Hypothetical protein Y49E10.25 [Caenorhabditis elegans] ref|NP_499630.2| Y49E10.25 [Caenorhabditis elegans] 1.0E-179
blast CAB11552 Hypothetical protein Y49E10.16 [Caenorhabditis elegans] ref|NP_499621.1| Y49E10.16 [Caenorhabditis elegans] 3.0E-76
blast CAB11554 Hypothetical protein Y49E10.18 [Caenorhabditis elegans] ref|NP_499623.2| Y49E10.18 [Caenorhabditis elegans] 6.0E-76
blast CAB11554 Hypothetical protein Y49E10.18 [Caenorhabditis elegans] ref|NP_499623.2| Y49E10.18 [Caenorhabditis elegans] 3.0E-63
blast CAB11552 Hypothetical protein Y49E10.16 [Caenorhabditis elegans] ref|NP_499621.1| Y49E10.16 [Caenorhabditis elegans] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.8E-54
Pfam IPR002921 EMBL-EBI Lipase, class 3 4.8E-54
Sequence
Target Sequence 
>C. ELEGANS:185239_AT
ttgttatgggttggtgggctcgagcatggcattcggagaatattggcaaataggacagat
gattacgagttatggataacaggcctatcacttggcggagctctggcatcagtgacgtca
tcatacattgcaaaactcaatttattcccaccatcccgcataaaacttgtcaccttcggt
cagccacgtgtcgcggactacgatcacgccgcttggcacgacgccacatttccctactca
tttcgtgtcatcaactcgagagatccgattccacacgttccaccgaaaatcggcccgatt
ccgctgttccatcatggtacagaaatatggtatcccaaagaaatgtggccattgtcgaat
tataaagtgtgcagtgaggcggacggggattactgtagcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTATGGGTTGGTGGGCTCGAGC 686 675 391 Antisense
TGGGCTCGAGCATGGCATTCGGAGA 565 553 405 Antisense
AACAGGCCTATCACTTGGCGGAGCT 190 135 468 Antisense
CACCATCCCGCATAAAACTTGTCAC 422 201 539 Antisense
CATAAAACTTGTCACCTTCGGTCAG 660 189 549 Antisense
CACGTGTCGCGGACTACGATCACGC 336 199 575 Antisense
CCTACTCATTTCGTGTCATCAACTC 170 269 623 Antisense
CCGAAAATCGGCCCGATTCCGCTGT 304 263 673 Antisense
ATTCCGCTGTTCCATCATGGTACAG 660 7 688 Antisense
AAGTGTGCAGTGAGGCGGACGGGGA 573 157 755 Antisense
GGCGGACGGGGATTACTGTAGCAAT 257 539 768 Antisense
Sequence Source Affymetrix Proprietary Database