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[185238_at]

Description Y67A10A.8 /REP_DB=WormBase Gene ID /WP=CE24569 /TR=Q9U1V1 /GB=CAB60449.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 81      6grp_total > 81      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 408
1 2 3 4 range
A 132
(-2.3)
P 		359.2
(2.6)
P 		377.1
(3)
P 		100.1
(-3)
P 		277
B 86.8
(-2.5)
P 		422.4
(3)
P 		362.6
(2)
P 		55.1
(-3)
P 		367
C 117.2
(-3)
P 		462.8
(3)
P 		385.3
(1.7)
P 		146.7
(-2.5)
P 		346
avr 112
(-2.8) 		414.8
(3) 		375
(2.2) 		100.6
(-3) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 142.1
(-3)
P 		259.9
(0.3)
P 		229.8
(-0.5)
P 		332.7
(2.3)
P 		356.5
(3)
P 		157.7
(-2.6)
P 		214
B 149.4
(-3)
P 		312.8
(-0.1)
P 		245.6
(-1.3)
P 		490.5
(3)
P 		378.4
(1)
P 		162
(-2.8)
P 		341
C 148.6
(-3)
P 		261.9
(-0.2)
P 		277.8
(0.1)
P 		395.3
(3)
P 		343.1
(1.7)
P 		152.3
(-2.9)
P 		247
avr 146.7
(-3) 		278.2
(0) 		251.1
(-0.6) 		406.2
(3) 		359.3
(1.9) 		157.3
(-2.8) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 48.1
(-0.6)
P 		78
(1.5)
P 		98.6
(3)
P 		14.7
(-3)
P 		84
B 27.7
(-2)
P 		104.3
(3)
P 		84
(1.7)
P 		11.7
(-3)
P 		93
C 38.8
(-2.2)
P 		133
(2.9)
P 		134.3
(3)
P 		24.7
(-3)
P 		110
avr 38.2
(-1.6) 		105.1
(3) 		105.6
(3) 		17
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 26.2
(-3)
P 		92.4
(1.9)
P 		50
(-1.2)
P 		84.4
(1.3)
P 		107.6
(3)
P 		38.4
(-2.1)
P 		81
B 52
(-3)
P 		104.1
(0.1)
P 		59.6
(-2.6)
P 		129.9
(1.6)
P 		153.7
(3)
P 		60.4
(-2.5)
P 		102
C 55.1
(-2.6)
P 		79.9
(-0.1)
P 		70.7
(-1)
P 		79.5
(-0.2)
P 		111
(3)
P 		51
(-3)
P 		60
avr 44.4
(-3) 		92.1
(0.6) 		60.1
(-1.8) 		97.9
(1) 		124.1
(3) 		49.9
(-2.6) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8612
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.8 NCBI
Target Description Y67A10A.8 /REP_DB=WormBase Gene ID /WP=CE24569 /TR=Q9U1V1 /GB=CAB60449.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070344 NCBI Caenorhabditis elegans Y67A10A.8 (Y67A10A.8) mRNA, complete cds. 11/11 None
SNAP00000008016 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14380098:14382752:-1 11/11 None
GENEFINDER00000008020 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14380098:14382752:-1 11/11 None
Y67A10A.8 ENSEMBL cdna:known chromosome:CEL140:IV:14380098:14382752:-1 gene:Y67A10A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14380103-14382122(-) 97.17 97.17
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.8
Entrez Gene 190510 Entrez gene
SwissProt Q9U1V1 EMBL-EBI
WormBase CE24569 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599921_AT similar to Progestin and adipoQ receptor family member III cfa
CANINE:1590970_S_AT similar to Progestin and adipoQ receptor family member III cfa
CANINE_2:CFA.7711.1.A1_AT similar to Progestin and adipoQ receptor family member III cfa
CANINE_2:CFAAFFX.13993.1.S1_AT similar to Progestin and adipoQ receptor family member III cfa
DROSGENOME1:155074_AT dm
DROSOPHILA_2:1628081_S_AT dm
CHICKEN:GGA.13734.1.S1_S_AT similar to progestin and adipoQ receptor family member III gga
CHICKEN:GGAAFFX.23368.1.S1_AT similar to progestin and adipoQ receptor family member III gga
HU35KSUBA:RC_AA608718_AT progestin and adipoQ receptor family member III hs
U133_X3P:HS2.374711.1.S1_3P_S_AT progestin and adipoQ receptor family member III hs
U133_X3P:HS2.374711.1.S1_3P_AT progestin and adipoQ receptor family member III hs
U133_X3P:HS.26860.0.S1_3P_AT progestin and adipoQ receptor family member III hs
HG-U133_PLUS_2:1557576_AT progestin and adipoQ receptor family member III hs
HG-U133A_2:213372_AT progestin and adipoQ receptor family member III hs
HG-U133_PLUS_2:213372_AT progestin and adipoQ receptor family member III hs
HG-U133A:213372_AT progestin and adipoQ receptor family member III hs
HG-U95AV2:39600_AT progestin and adipoQ receptor family member III hs
HG-U95D:82517_S_AT progestin and adipoQ receptor family member III hs
HG-U95D:82519_AT progestin and adipoQ receptor family member III hs
HG-U133_PLUS_2:240622_AT Progestin and adipoQ receptor family member III hs
HG-U133B:240622_AT Progestin and adipoQ receptor family member III hs
HG-U95C:55783_AT Progestin and adipoQ receptor family member III hs
HG-U95E:69564_R_AT Progestin and adipoQ receptor family member III hs
U133_X3P:HS.199767.0.A1_3P_AT Progestin and adipoQ receptor family member III hs
MG-U74BV2:164038_AT progestin and adipoQ receptor family member III mm
MOE430B:1429216_AT progestin and adipoQ receptor family member III mm
MOUSE430_2:1429216_AT progestin and adipoQ receptor family member III mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60449 Hypothetical protein Y67A10A.8 [Caenorhabditis elegans] ref|NP_502745.1| Y67A10A.8 [Caenorhabditis elegans] 1.0E-151
blast CAB60449 Hypothetical protein Y67A10A.8 [Caenorhabditis elegans] ref|NP_502745.1| Y67A10A.8 [Caenorhabditis elegans] 1.0E-148
blast CAE73993 Hypothetical protein CBG21626 [Caenorhabditis briggsae] 1.0E-144
blast CAE73993 Hypothetical protein CBG21626 [Caenorhabditis briggsae] 1.0E-141
blast CAG04905 unnamed protein product [Tetraodon nigroviridis] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR004254 EMBL-EBI Hly-III related proteins 3.0E-77
Pfam IPR004254 EMBL-EBI Hly-III related proteins 4.4E-74
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502745.1 6 20-42,52-71,91-113,117-136,149-171,186-208
Y67A10A.8 6 20-42,52-71,91-113,117-136,149-171,186-208
SNAP00000008016 6 20-42,52-71,91-113,117-136,149-171,186-208
GENEFINDER00000008020 6 20-42,52-71,91-113,117-136,149-171,186-208
Sequence
Target Sequence 
>C. ELEGANS:185238_AT
atttcggcgggtcttcttggaatgtatctcaatgggatttacacggcgtttttctgtttt
caggaccatctcacctcgtatatctacatcttactgggcatttttgtaatcaccgcgtat
gtaccaactcggcaagacttctttgagcgcaaaattattggctcccgagttggtctcctt
cacataatttattgtataatcattacatttggcatctgtccaacagttcattgggtattc
cttcatggaggatttgagaatgatcatgttactaaatggtttccaaatgtagtagttctc
tactcgttaatagctgctgcctttatgttttacgtcacaatggtgccggaaaaactgtgg
ccaggaaaattcgacgtggtcggatgttcccatcaatggtggcatattttcattctcgga
gcaatgatctattggcaacaatctggaaatcaattgctcactgaatatcgatcattcact
gacagttgccatcgatttattcccagaaatttctctgaaatctcttcttcttcagtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGGCGGGTCTTCTTGGAATGT 412 1 292 Antisense
TACACGGCGTTTTTCTGTTTTCAGG 246 643 331 Antisense
ATCTCACCTCGTATATCTACATCTT 291 33 359 Antisense
TGGGCATTTTTGTAATCACCGCGTA 180 555 386 Antisense
TCACCGCGTATGTACCAACTCGGCA 501 625 401 Antisense
AATTATTGGCTCCCGAGTTGGTCTC 169 175 444 Antisense
AGTTGGTCTCCTTCACATAATTTAT 308 65 459 Antisense
TCTACTCGTTAATAGCTGCTGCCTT 638 613 590 Antisense
CTGCTGCCTTTATGTTTTACGTCAC 663 235 605 Antisense
AGTTGCCATCGATTTATTCCCAGAA 583 63 775 Antisense
TGAAATCTCTTCTTCTTCAGTCAAT 203 573 807 Antisense
Sequence Source Affymetrix Proprietary Database