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[185236_at]

Description Y113G7B.1 /REP_DB=WormBase Gene ID /WP=CE23284 /TR=Q9U2Y1 /GB=CAB54324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.9
(-2.7)
A 		2.6
(-3)
A 		9.5
(3)
A 		9
(2.6)
A 		7
B 4.2
(-3)
A 		16
(3)
A 		15.8
(2.9)
A 		4.9
(-2.6)
A 		12
C 2.3
(-3)
A 		3.6
(-2.8)
A 		10.4
(-1.8)
A 		41.5
(3)
A 		39
avr 3.1
(-3) 		7.4
(-1.3) 		11.9
(0.4) 		18.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8.1
(-1.8)
A 		9.2
(-1.6)
A 		32.5
(3)
A 		2.3
(-3)
A 		7.2
(-2)
A 		3.6
(-2.7)
A 		30
B 6.1
(3)
A 		4.9
(1.5)
A 		5.1
(1.7)
A 		3.4
(-0.4)
A 		1.4
(-3)
A 		2.5
(-1.6)
A 		5
C 5.5
(-2)
A 		23.8
(3)
A 		19
(1.7)
A 		8.1
(-1.3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		22
avr 6.6
(-1.5) 		12.6
(0.7) 		18.9
(3) 		4.6
(-2.3) 		3.5
(-2.7) 		2.6
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-1.7)
A 		0.6
(-3)
A 		2.5
(3)
A 		1.3
(-0.8)
A 		2
B 1.3
(-2.4)
A 		3.9
(3)
A 		3.7
(2.6)
A 		1
(-3)
A 		3
C 0.7
(-3)
A 		1
(-2.7)
A 		3.6
(-0.2)
A 		7
(3)
A 		6
avr 1
(-3) 		1.8
(-0.9) 		3.3
(3) 		3.1
(2.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		3.3
(-0.5)
A 		7.1
(3)
A 		0.6
(-3)
A 		2.2
(-1.5)
A 		0.9
(-2.7)
A 		7
B 2.1
(3)
A 		1.6
(1)
A 		1.2
(-0.6)
A 		0.9
(-1.8)
A 		0.6
(-3)
A 		0.9
(-1.8)
A 		2
C 2
(-1.7)
A 		7.3
(3)
A 		4.8
(0.8)
A 		1.6
(-2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		7
avr 1.9
(-1.2) 		4.1
(2.5) 		4.4
(3) 		1
(-2.7) 		1.1
(-2.5) 		0.8
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13245
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.1 NCBI
Target Description Y113G7B.1 /REP_DB=WormBase Gene ID /WP=CE23284 /TR=Q9U2Y1 /GB=CAB54324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024704 ENSEMBL cdna:SNAP chromosome:CEL140:V:20185707:20186879:-1 11/11 None
GENEFINDER00000024731 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20185836:20186879:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075491 5/11 Cross Hyb Matching Probes None
Y113G7B.1 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20185706-20186879(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54338 Hypothetical protein Y113G7B.3 [Caenorhabditis elegans] ref|NP_507893.1| Y113G7B.3 [Caenorhabditis elegans] 1.0E-102
blast CAB54338 Hypothetical protein Y113G7B.3 [Caenorhabditis elegans] ref|NP_507893.1| Y113G7B.3 [Caenorhabditis elegans] 4.0E-80
blast CAB54324 Hypothetical protein Y113G7B.1 [Caenorhabditis elegans] ref|NP_507892.2| Y113G7B.1 [Caenorhabditis elegans] 5.0E-67
blast CAB54324 Hypothetical protein Y113G7B.1 [Caenorhabditis elegans] ref|NP_507892.2| Y113G7B.1 [Caenorhabditis elegans] 6.0E-67
blast CAB54326 Hypothetical protein Y113G7B.4 [Caenorhabditis elegans] ref|NP_507895.1| Y113G7B.4 [Caenorhabditis elegans] 2.0E-51
blast CAB54329 Hypothetical protein Y113G7B.7 [Caenorhabditis elegans] ref|NP_507897.1| Y113G7B.7 [Caenorhabditis elegans] 4.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.3E-40
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.3E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:185236_AT
gttcagcttgtacgcagtgtgtgacgatgaactgaccacaaaccttctcaaaaagattac
aaatgtagaatatatgtttcatgccaaaagtatttacctgagcgttgcgaagttcagtaa
tgtcatctctatcctttctcactttaaaccaggatttcttgaagaaattgtttttttctg
tcattctggtcatgaaagtatacatgaactctttcttctagaacaatggaaacaagttaa
atcagtctttattaagtggttcccattcgatgatttcccctttgagcacttggtccatgt
gtcttgtttcgaactcaacttgcccagaatatcagtctctgttgcgattataattagaga
cgttctcatgaaaaccgctcaattcgaatatggaaagattcgtctgtacgatttaaacaa
tatggatgaccctccagatattgaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGCTTGTACGCAGTGTGTGAC 403 445 429 Antisense
GATGAACTGACCACAAACCTTCTCA 604 409 454 Antisense
GTTCAGTAATGTCATCTCTATCCTT 400 443 540 Antisense
CTATCCTTTCTCACTTTAAACCAGG 220 223 557 Antisense
TGTTTTTTTCTGTCATTCTGGTCAT 592 559 597 Antisense
AAGTGGTTCCCATTCGATGATTTCC 579 159 682 Antisense
GAGCACTTGGTCCATGTGTCTTGTT 207 391 712 Antisense
GTCTTGTTTCGAACTCAACTTGCCC 185 469 729 Antisense
CAACTTGCCCAGAATATCAGTCTCT 612 187 744 Antisense
GAGACGTTCTCATGAAAACCGCTCA 546 393 785 Antisense
GGATGACCCTCCAGATATTGAAGCG 292 513 852 Antisense
Sequence Source Affymetrix Proprietary Database