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[185232_at]

Description F48A11.3 /REP_DB=WormBase Gene ID /WP=CE10726 /TR=O17366 /GB=AAB71285.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 44      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.3
(-3)
A 		23.4
(3)
A 		9.5
(-1)
A 		8.6
(-1.2)
A 		21
B 25.1
(0.8)
A 		38
(3)
A 		3.8
(-2.8)
A 		2.9
(-3)
A 		35
C 12.7
(1)
A 		17.6
(3)
A 		3.5
(-2.7)
A 		2.7
(-3)
A 		15
avr 13.4
(-0.6) 		26.3
(3) 		5.6
(-2.8) 		4.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.1
(-2.9)
A 		25.3
(3)
A 		3.6
(-3)
A 		14.6
(0)
A 		20.3
(1.6)
A 		4.3
(-2.8)
A 		22
B 1.8
(-3)
A 		5.7
(-2.4)
A 		44.3
(3)
A 		6.2
(-2.4)
A 		2.8
(-2.9)
A 		41.7
(2.6)
A 		43
C 12.4
(-1.3)
A 		13.9
(-1)
A 		5.4
(-2.5)
A 		36.3
(3)
A 		10.3
(-1.6)
A 		2.6
(-3)
A 		34
avr 6.1
(-3) 		15
(1.1) 		17.8
(2.4) 		19
(3) 		11.1
(-0.7) 		16.2
(1.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.8
(-3)
A 		5.1
(3)
A 		2.5
(-0.6)
A 		1.3
(-2.3)
A 		4
B 8
(2)
A 		9.4
(3)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		9
C 4.2
(1.9)
A 		5.1
(3)
A 		1.2
(-2)
A 		0.4
(-3)
A 		5
avr 4.3
(0.7) 		6.5
(3) 		1.5
(-2.3) 		0.8
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.8
(-3)
A 		9
(3)
A 		0.8
(-3)
A 		3.7
(-0.9)
A 		6.1
(0.9)
A 		1
(-2.9)
A 		8
B 0.6
(-3)
A 		1.9
(-2.5)
A 		10.8
(1.1)
A 		1.6
(-2.6)
A 		1.1
(-2.8)
A 		15.5
(3)
A 		15
C 4.6
(0.5)
A 		4.3
(0.2)
A 		1.4
(-2.5)
A 		7.3
(3)
A 		3.3
(-0.8)
A 		0.9
(-3)
A 		6
avr 2
(-3) 		5.1
(1.9) 		4.3
(0.6) 		4.2
(0.5) 		3.5
(-0.6) 		5.8
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5266
Sequence Type Exemplar sequence
Representative Public ID F48A11.3 NCBI
Target Description F48A11.3 /REP_DB=WormBase Gene ID /WP=CE10726 /TR=O17366 /GB=AAB71285.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061279 NCBI Caenorhabditis elegans F48A11.3 (F48A11.3) mRNA, complete cds. 11/11 None
SNAP00000036183 ENSEMBL cdna:SNAP chromosome:CEL140:II:196985:198061:1 9/11 None
GENEFINDER00000036193 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:196985:200226:1 9/11 None
F48A11.3 ENSEMBL cdna:known chromosome:CEL140:II:196985:198087:1 gene:F48A11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:196984-198087(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48A11.3
Entrez Gene 185961 Entrez gene
WormBase CE10726 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493680 F48A11.3 [Caenorhabditis elegans] 6.0E-50
blast ABA54418 Hypothetical protein F48A11.2 [Caenorhabditis elegans] 2.0E-38
blast ABA54418 Hypothetical protein F48A11.2 [Caenorhabditis elegans] 6.0E-36
blast NP_493680 F48A11.3 [Caenorhabditis elegans] 7.0E-36
blast ABA54418 Hypothetical protein F48A11.2 [Caenorhabditis elegans] 7.0E-36
blast NP_493680 F48A11.3 [Caenorhabditis elegans] 2.0E-35
blast CAE62793 Hypothetical protein CBG06967 [Caenorhabditis briggsae] 2.0E-22
blast CAE62793 Hypothetical protein CBG06967 [Caenorhabditis briggsae] 1.0E-20
Sequence
Target Sequence 
>C. ELEGANS:185232_AT
ggagtttgtggaggagtgggttcaggactcacatactggagcccaggtccctctcgatca
tttggtatccctctacggatatgcgcttcttggccttgaagattcttcggagacggttag
atttcgaaaaattgaaacccaaattgaggaatctggagtcaaggatgaagaagagcaaca
ctattccagttcccaagaggtagcaaagaaggaagaggataaagaatatgaagagccaaa
aaggagagtcagggtaagttcttcaacaatttttgttctaggatatacagttgcgaccag
atac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTTGTGGAGGAGTGGGTTCAG 482 517 36 Antisense
GTGGGTTCAGGACTCACATACTGGA 348 487 51 Antisense
GACTCACATACTGGAGCCCAGGTCC 177 373 61 Antisense
GATCATTTGGTATCCCTCTACGGAT 500 419 91 Antisense
CTCTACGGATATGCGCTTCTTGGCC 181 231 106 Antisense
GCGCTTCTTGGCCTTGAAGATTCTT 39 289 118 Antisense
GAAGATTCTTCGGAGACGGTTAGAT 568 335 133 Antisense
GAAGAAGAGCAACACTATTCCAGTT 503 339 202 Antisense
TCCAGTTCCCAAGAGGTAGCAAAGA 225 275 220 Antisense
GGAGAGTCAGGGTAAGTTCTTCAAC 101 519 278 Antisense
AGGATATACAGTTGCGACCAGATAC 69 55 315 Antisense
Sequence Source Affymetrix Proprietary Database