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[185231_at]

Description F41E6.14 /REP_DB=WormBase Gene ID /WP=CE10270 /TR=O16467 /GB=AAB65962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 40      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 494
1 2 3 4 range
A 26.2
(-3)
A 		114.9
(-1.9)
P 		520.3
(3)
P 		127.9
(-1.8)
P 		494
B 49.6
(-3)
A 		70.3
(-2.7)
P 		460.9
(3)
P 		66.8
(-2.7)
A 		411
C 45.8
(-3)
A 		102.4
(-2.3)
P 		510.3
(3)
P 		120.5
(-2)
P 		465
avr 40.5
(-3) 		95.9
(-2.3) 		497.2
(3) 		105.1
(-2.2) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 716
1 2 3 4 5 6 range
A 33.5
(-3)
A 		40
(-2.9)
A 		390.5
(0.2)
P 		697.3
(3)
P 		238.4
(-1.1)
P 		30
(-3)
A 		667
B 89.3
(-2.6)
P 		50.2
(-3)
P 		409.1
(0.5)
P 		669.9
(3)
P 		234.1
(-1.2)
P 		46.3
(-3)
A 		624
C 61.3
(-2.9)
M 		55.5
(-3)
P 		321.4
(-0.7)
P 		746
(3)
P 		282.5
(-1)
P 		51.8
(-3)
A 		694
avr 61.4
(-2.8) 		48.6
(-2.9) 		373.7
(0) 		704.4
(3) 		251.7
(-1.1) 		42.7
(-3) 		662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 9.5
(-3)
A 		24.9
(-2.3)
P 		136
(3)
P 		18.7
(-2.6)
P 		127
B 15.8
(-2.9)
A 		17.4
(-2.8)
P 		106.8
(3)
P 		14.2
(-3)
A 		93
C 15.1
(-3)
A 		29.4
(-2.5)
P 		177.9
(3)
P 		20.3
(-2.8)
P 		163
avr 13.5
(-3) 		23.9
(-2.5) 		140.2
(3) 		17.7
(-2.8) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 6.2
(-3)
A 		14.2
(-2.7)
A 		85.1
(-0.2)
P 		176.8
(3)
P 		71.9
(-0.7)
P 		7.3
(-3)
A 		171
B 31.1
(-2.5)
P 		16.7
(-3)
P 		99.3
(0.1)
P 		177.4
(3)
P 		95.1
(-0.1)
P 		17.3
(-3)
A 		161
C 22.7
(-2.7)
M 		16.9
(-3)
P 		81.8
(-0.1)
P 		150
(3)
P 		91.4
(0.4)
P 		17.4
(-3)
A 		133
avr 20
(-2.8) 		15.9
(-2.9) 		88.7
(-0.1) 		168.1
(3) 		86.1
(-0.2) 		14
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12503
Sequence Type Exemplar sequence
Representative Public ID F41E6.14 NCBI
Target Description F41E6.14 /REP_DB=WormBase Gene ID /WP=CE10270 /TR=O16467 /GB=AAB65962.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072827 NCBI Caenorhabditis elegans F41E6.14 (F41E6.14) mRNA, complete cds. 11/11 None
SNAP00000009433 ENSEMBL cdna:SNAP chromosome:CEL140:V:8634526:8635694:-1 11/11 None
GENEFINDER00000009445 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8634526:8637423:-1 11/11 None
F41E6.14 ENSEMBL cdna:known chromosome:CEL140:V:8634480:8637423:-1 gene:F41E6.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8634480-8637424(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.14
Entrez Gene 185622 Entrez gene
SwissProt O16467 EMBL-EBI
WormBase CE10270 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65962 Hypothetical protein F41E6.14 [Caenorhabditis elegans] ref|NP_505228.1| F41E6.14 [Caenorhabditis elegans] 0.0
blast CAE58347 Hypothetical protein CBG01468 [Caenorhabditis briggsae] 0.0
blast AAB65962 Hypothetical protein F41E6.14 [Caenorhabditis elegans] ref|NP_505228.1| F41E6.14 [Caenorhabditis elegans] 1.0E-167
blast CAE58347 Hypothetical protein CBG01468 [Caenorhabditis briggsae] 1.0E-104
blast T03854 hypothetical protein C02A12.2 - Caenorhabditis elegans 7.0E-45
blast CAE65404 Hypothetical protein CBG10356 [Caenorhabditis briggsae] 9.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.4E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505228.1 9 20-42,70-92,132-154,169-191,229-251,255-274,281-302,317-339,348-370
F41E6.14 9 20-42,70-92,132-154,169-191,229-251,255-274,281-302,317-339,348-370
GENEFINDER00000009445 9 20-42,70-92,132-154,169-191,229-251,255-274,281-302,317-339,348-370
Sequence
Target Sequence 
>C. ELEGANS:185231_AT
gctccacttctaaatattgtcccactgtataatgcagttgttcttgacatggcaagagat
attaaacctgatcttttgtggattattcagggaatgaacgaaatcacttttcatggtacc
tctaacacctacaacttcgagtcaaatgctcttgatgaagtgattcctaagacgttggat
acattcaagactgttgcgaaaatggttttcattgatcttccatattatgttacaatagac
tatccagcaaagttgatggcaagaagcttgatttatagaaaaaatctggaagaaaagttg
gcggtcaactttaagaccgtcaacagacaactttcagaccaaactgatagactattgaat
gctaattgcagtaattgtcaatttaatgatattcagaaggctctcacgaatggatccgac
aagttttatctcttcgaaaaagatacctataaagcattgacttacgatggatctcacttg
acacttaccggattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCACTTCTAAATATTGTCCCAC 555 297 1420 Antisense
AATGCAGTTGTTCTTGACATGGCAA 597 165 1450 Antisense
AAACCTGATCTTTTGTGGATTATTC 453 125 1483 Antisense
AAATCACTTTTCATGGTACCTCTAA 497 5 1520 Antisense
TCATGGTACCTCTAACACCTACAAC 401 621 1530 Antisense
TCTAACACCTACAACTTCGAGTCAA 707 613 1540 Antisense
GACCGTCAACAGACAACTTTCAGAC 340 383 1734 Antisense
GAAGGCTCTCACGAATGGATCCGAC 612 333 1815 Antisense
GATCCGACAAGTTTTATCTCTTCGA 518 415 1832 Antisense
TGACTTACGATGGATCTCACTTGAC 55 571 1877 Antisense
TCTCACTTGACACTTACCGGATTTA 5 609 1891 Antisense
Sequence Source Affymetrix Proprietary Database