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[185230_s_at]

Description Y75B8A.14 /REP_DB=WormBase Gene ID /WP=CE23026 /TR=Q9XW68 /GB=CAA22102.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 471
1 2 3 4 range
A 1071.4
(-0.1)
P 		850.9
(-3)
P 		943.2
(-1.8)
P 		1306.9
(3)
P 		456
B 1129.5
(2.3)
P 		835.6
(-3)
P 		934.8
(-1.2)
P 		1170.2
(3)
P 		335
C 940.5
(-1.1)
P 		870.7
(-2.7)
P 		856
(-3)
P 		1127.7
(3)
P 		272
avr 1047.1
(0.3) 		852.4
(-3) 		911.3
(-2) 		1201.6
(3) 		349

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 825.7
(2.3)
P 		723.3
(-1.4)
P 		678.3
(-3)
P 		690.7
(-2.6)
P 		846.5
(3)
P 		830.9
(2.4)
P 		168
B 856
(2)
P 		673.2
(-0.7)
P 		513.6
(-3)
P 		724.1
(0.1)
P 		832.2
(1.6)
P 		926.5
(3)
P 		413
C 737.5
(3)
P 		719.3
(2.5)
P 		510.6
(-3)
P 		698.4
(2)
P 		724.1
(2.6)
P 		659.9
(0.9)
P 		227
avr 806.4
(3) 		705.3
(0.5) 		567.5
(-3) 		704.4
(0.4) 		800.9
(2.9) 		805.8
(3) 		239
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 390.1
(3)
P 		184.7
(-3)
P 		246.6
(-1.2)
P 		191.3
(-2.8)
P 		205
B 360.2
(3)
P 		206.4
(-3)
P 		216.6
(-2.6)
P 		249.4
(-1.3)
P 		154
C 311.3
(3)
P 		250.3
(-0)
P 		298.3
(2.4)
P 		190.2
(-3)
P 		121
avr 353.9
(3) 		213.8
(-2.9) 		253.8
(-1.2) 		210.3
(-3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 152.2
(-2.8)
P 		257.3
(3)
P 		147.7
(-3)
P 		175.2
(-1.5)
P 		255.4
(2.9)
P 		202.3
(-0)
P 		110
B 297.9
(1.7)
P 		224.1
(-0.3)
P 		124.7
(-3)
P 		191.8
(-1.2)
P 		338.1
(2.8)
P 		345.5
(3)
P 		221
C 273.4
(3)
P 		219.5
(0.7)
P 		130
(-3)
P 		140.4
(-2.6)
P 		234.3
(1.4)
P 		220.9
(0.8)
P 		143
avr 241.2
(1.5) 		233.6
(1.2) 		134.1
(-3) 		169.1
(-1.5) 		275.9
(3) 		256.2
(2.2) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185230_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7880
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.14 NCBI
Target Description Y75B8A.14 /REP_DB=WormBase Gene ID /WP=CE23026 /TR=Q9XW68 /GB=CAA22102.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067186 NCBI Caenorhabditis elegans Y75B8A.14 (Y75B8A.14) mRNA, complete cds. 11/11 None
SNAP00000020081 ENSEMBL cdna:SNAP chromosome:CEL140:III:12216775:12223799:-1 11/11 None
GENEFINDER00000020191 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12216775:12218503:-1 11/11 None
Y75B8A.14 ENSEMBL cdna:known chromosome:CEL140:III:12216660:12218509:-1 gene:Y75B8A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12216770-12218499(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.14
Entrez Gene 176649 Entrez gene
SwissProt Q9XW68 EMBL-EBI
WormBase CE23026 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254788_AT ATP-binding family protein at
ATGENOME1:17657_AT ATP-binding family protein at
CANINE:1588304_AT similar to protein x 0004 cfa
CANINE_2:CFA.11524.1.S1_AT similar to protein x 0004 cfa
CANINE_2:CFAAFFX.13416.1.S1_S_AT similar to protein x 0004 cfa
DROSOPHILA_2:1625466_AT dm
DROSGENOME1:153743_AT dm
CHICKEN:GGAAFFX.2375.1.S1_AT similar to PRYA1876 gga
HG-U133A:218461_AT ATP binding domain 1 family, member C hs
HG-U133_PLUS_2:218461_AT ATP binding domain 1 family, member C hs
HG-FOCUS:218461_AT ATP binding domain 1 family, member C hs
HG-U133A_2:218461_AT ATP binding domain 1 family, member C hs
U133_X3P:G9994188_3P_X_AT ATP binding domain 1 family, member C hs
U133_X3P:G9994188_3P_AT ATP binding domain 1 family, member C hs
HG-U95E:78491_R_AT ATP binding domain 1 family, member C hs
MG-U74AV2:103884_AT ATP binding domain 1 family, member C mm
MOE430A:1424682_AT ATP binding domain 1 family, member C mm
MOUSE430A_2:1424682_AT ATP binding domain 1 family, member C mm
MOUSE430_2:1424682_AT ATP binding domain 1 family, member C mm
MU19KSUBA:TC17037_AT ATP binding domain 1 family, member C (Atpbd1c), mRNA mm
MU19KSUBA:TC21562_AT ATP binding domain 1 family, member C (Atpbd1c), mRNA mm
RAE230B:1393604_AT similar to RIKEN cDNA A930018B01 rn
RAT230_2:1393604_AT similar to RIKEN cDNA A930018B01 rn
RG-U34C:RC_AI071167_AT Similar to RIKEN cDNA A930018B01 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22102 Hypothetical protein Y75B8A.14 [Caenorhabditis elegans] ref|NP_499587.1| Y75B8A.14 [Caenorhabditis elegans] 1.0E-155
blast CAE75119 Hypothetical protein CBG23047 [Caenorhabditis briggsae] 1.0E-152
blast CAA22102 Hypothetical protein Y75B8A.14 [Caenorhabditis elegans] ref|NP_499587.1| Y75B8A.14 [Caenorhabditis elegans] 1.0E-124
blast CAE75119 Hypothetical protein CBG23047 [Caenorhabditis briggsae] 1.0E-121
blast CAA22102 Hypothetical protein Y75B8A.14 [Caenorhabditis elegans] ref|NP_499587.1| Y75B8A.14 [Caenorhabditis elegans] 1.0E-105
blast CAE75119 Hypothetical protein CBG23047 [Caenorhabditis briggsae] 1.0E-103
blast XP_788313 PREDICTED: similar to protein x 0004 [Strongylocentrotus purpuratus] 4.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR004130 EMBL-EBI Conserved hypothetical ATP binding protein 4.8E-88
Pfam IPR004130 EMBL-EBI Conserved hypothetical ATP binding protein 3.1E-115
Pfam IPR004130 EMBL-EBI Conserved hypothetical ATP binding protein 1.1E-120
Sequence
Target Sequence 
>C. ELEGANS:185230_S_AT
aatggctccacgacgagcttgacgaaggagaagacgactatttcgtgatcgattgcccgg
gacagatcgaactctactcgcatcttccagttatgcgtcagatcgtcgatgctctcaaat
catgggactttaacgtgtgctccgtcttcctaatcgacacgaatttcgttttagacgccg
agaaattcatctccggagctcttacagcgctctctgcaatggttgcaattgagaccccag
cgataaatgttctaacgaagatggatctgttatcggagagaaataagcaactggtcgacg
aatttctcgagacagatacccgctcaattgtagatcaagacgagactgtctggaattcga
agcatcggaagctgacgcgaactattgctcaggtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTCCACGACGAGCTTGACGA 250 161 275 Antisense
TATTTCGTGATCGATTGCCCGGGAC 467 661 313 Antisense
GGACAGATCGAACTCTACTCGCATC 536 525 334 Antisense
GCATCTTCCAGTTATGCGTCAGATC 252 309 354 Antisense
GATCGTCGATGCTCTCAAATCATGG 568 417 375 Antisense
ATGGGACTTTAACGTGTGCTCCGTC 253 51 396 Antisense
CTCCGTCTTCCTAATCGACACGAAT 239 233 414 Antisense
GAAATTCATCTCCGGAGCTCTTACA 589 363 456 Antisense
TACAGCGCTCTCTGCAATGGTTGCA 586 643 477 Antisense
TTCTCGAGACAGATACCCGCTCAAT 458 691 578 Antisense
GACGCGAACTATTGCTCAGGTGCTC 269 381 648 Antisense
Sequence Source Affymetrix Proprietary Database