[Home] | [Total List]

[185229_at]

Description Y39B6B.BB /REP_DB=WormBase Gene ID /WP=CE21672 /TR=Q9NET2 /GB=CAB60933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_high_8_8 > 06      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1359
1 2 3 4 range
A 254
(-2.7)
P 		211.6
(-2.9)
P 		184.2
(-3)
P 		1520.9
(3)
P 		1337
B 223.5
(-2.6)
P 		243.6
(-2.5)
P 		161.9
(-3)
P 		1178.3
(3)
P 		1016
C 252.9
(-2.7)
P 		184.1
(-3)
A 		208.4
(-2.9)
P 		1392.4
(3)
P 		1208
avr 243.5
(-2.7) 		213.1
(-2.9) 		184.8
(-3) 		1363.9
(3) 		1179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 500.4
(-1.1)
P 		337.3
(-3)
P 		484.8
(-1.3)
P 		786.8
(2.3)
P 		670.8
(0.9)
P 		848.2
(3)
P 		511
B 441.4
(-2.8)
P 		417.8
(-3)
P 		449.2
(-2.7)
P 		626.1
(-1)
P 		730.9
(-0.1)
P 		1055.2
(3)
P 		637
C 484.3
(-2)
P 		386.2
(-3)
P 		482.8
(-2)
P 		687.9
(-0)
P 		649.4
(-0.4)
P 		991.4
(3)
P 		605
avr 475.4
(-2) 		380.4
(-3) 		472.3
(-2.1) 		700.3
(0.3) 		683.7
(0.1) 		964.9
(3) 		585
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 92.5
(-1.4)
P 		45.9
(-3)
P 		48.1
(-2.9)
P 		222.6
(3)
P 		177
B 71.3
(-2.1)
P 		60.2
(-2.4)
P 		37.5
(-3)
P 		251.1
(3)
P 		214
C 83.7
(-2)
P 		52.9
(-3)
A 		72.6
(-2.4)
P 		234.8
(3)
P 		182
avr 82.5
(-2) 		53
(-3) 		52.7
(-3) 		236.2
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 92.2
(-3)
P 		120
(-1.5)
P 		105.6
(-2.3)
P 		199.5
(2.6)
P 		202.4
(2.8)
P 		206.5
(3)
P 		114
B 153.6
(-2.1)
P 		139.1
(-2.4)
P 		109.1
(-3)
P 		165.8
(-1.8)
P 		297
(1)
P 		393.5
(3)
P 		284
C 179.5
(-1.3)
P 		117.9
(-3)
P 		122.9
(-2.9)
P 		138.3
(-2.4)
P 		210.1
(-0.4)
P 		331.9
(3)
P 		214
avr 141.8
(-2.1) 		125.7
(-2.6) 		112.5
(-3) 		167.9
(-1.3) 		236.5
(0.8) 		310.6
(3) 		198
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19457
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.BB NCBI
Target Description Y39B6B.BB /REP_DB=WormBase Gene ID /WP=CE21672 /TR=Q9NET2 /GB=CAB60933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171603 NCBI Caenorhabditis elegans Y39B6A.5 (Y39B6A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000030701 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19160297:19161329:-1 9/11 None
Y39B6A.5 ENSEMBL cdna:known chromosome:CEL140:V:19160232:19161393:-1 gene:Y39B6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19160330-19161329(-) 96.79 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.5
Entrez Gene 180260 Entrez gene
SwissProt Q9NET2 EMBL-EBI
WormBase CE21672 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51072 Hypothetical protein Y39B6A.5 [Caenorhabditis elegans] ref|NP_741693.1| Y39B6A.5 [Caenorhabditis elegans] 1.0E-22
blast CAB07306 B0413.1 [Caenorhabditis elegans] 1.0E-18
blast CAC51072 Hypothetical protein Y39B6A.5 [Caenorhabditis elegans] ref|NP_741693.1| Y39B6A.5 [Caenorhabditis elegans] 1.0E-17
blast CAB07306 B0413.1 [Caenorhabditis elegans] 2.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741693.1 1 4-23
Y39B6A.5 1 4-23
GENEFINDER00000030701 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:185229_AT
tttcttctcgttcttatcacaactctctcagttctcttttccggcgtctcggcagaaatg
gactcaaaaacaccggaaaatgctccaaaatctaatgctccagagcacatccctggctcc
aacatgatcggagccggtagggggcatcgtgtgcagaactggaagagctcacagggagct
acagacaaatctgaccaaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTTCTCGTTCTTATCACAACTC 132 673 28 Antisense
TTCCGGCGTCTCGGCAGAAATGGAC 206 699 66 Antisense
GGCGTCTCGGCAGAAATGGACTCAA 263 541 70 Antisense
GACTCAAAAACACCGGAAAATGCTC 61 367 88 Antisense
CTAATGCTCCAGAGCACATCCCTGG 366 227 119 Antisense
ATCCCTGGCTCCAACATGATCGGAG 77 37 136 Antisense
GATCGGAGCCGGTAGGGGGCATCGT 657 417 153 Antisense
GGGGGCATCGTGTGCAGAACTGGAA 551 497 167 Antisense
AGAACTGGAAGAGCTCACAGGGAGC 482 73 182 Antisense
CTCACAGGGAGCTACAGACAAATCT 533 227 195 Antisense
GCTACAGACAAATCTGACCAACCAC 658 301 205 Antisense
Sequence Source Affymetrix Proprietary Database