[Home] | [Total List]

[185228_s_at]

Description F20D12.4 /REP_DB=WormBase Gene ID /WP=CE04434 /TR=Q19642 /GB=AAA81674.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 96      6grp_total > 96      4grp_total > 56      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 703.6
(-1.1)
P 		668.8
(-1.9)
P 		885.3
(3)
P 		621.4
(-3)
P 		264
B 735.1
(-1.9)
P 		842.7
(0)
P 		1008.3
(3)
P 		673
(-3)
P 		335
C 704
(-1.1)
P 		817.2
(0.3)
P 		1034.3
(3)
P 		552.9
(-3)
P 		481
avr 714.2
(-1.4) 		776.2
(-0.3) 		976
(3) 		615.8
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 947
1 2 3 4 5 6 range
A 668.4
(-3)
P 		750.8
(-2.2)
P 		674.6
(-2.9)
P 		1070.4
(0.8)
P 		1051.6
(0.6)
P 		1298.5
(3)
P 		630
B 586.8
(-2.3)
P 		653.6
(-1.7)
P 		511.7
(-3)
P 		755.8
(-0.8)
P 		1111.9
(2.4)
P 		1179.9
(3)
P 		668
C 630.5
(-2.7)
P 		587.2
(-3)
P 		794.3
(-1.6)
P 		818.7
(-1.4)
P 		1141
(0.8)
P 		1458.9
(3)
P 		872
avr 628.6
(-3) 		663.9
(-2.7) 		660.2
(-2.7) 		881.6
(-0.8) 		1101.5
(1.1) 		1312.4
(3) 		684
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 256.2
(3)
P 		145.2
(-1)
P 		231.4
(2.1)
P 		91
(-3)
P 		165
B 234.4
(3)
P 		208.1
(1.3)
P 		233.7
(3)
P 		143.4
(-3)
P 		91
C 233.1
(0.1)
P 		234.9
(0.2)
P 		360.5
(3)
P 		93.2
(-3)
P 		267
avr 241.2
(1.8) 		196.1
(0.1) 		275.2
(3) 		109.2
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 123.2
(-3)
P 		267
(1.4)
P 		146.9
(-2.3)
P 		271.5
(1.6)
P 		317.3
(3)
P 		316.1
(3)
P 		194
B 204.2
(-1.5)
P 		217.6
(-1.3)
P 		124.3
(-3)
P 		200.2
(-1.6)
P 		451.8
(3)
P 		440
(2.8)
P 		328
C 233.7
(-1.7)
P 		179.2
(-2.7)
P 		202.2
(-2.3)
P 		164.6
(-3)
P 		369.2
(0.8)
P 		488.4
(3)
P 		324
avr 187
(-2.3) 		221.3
(-1.5) 		157.8
(-3) 		212.1
(-1.7) 		379.4
(2.2) 		414.8
(3) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185228_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10066
Sequence Type Exemplar sequence
Representative Public ID F20D12.4 NCBI
Target Description F20D12.4 /REP_DB=WormBase Gene ID /WP=CE04434 /TR=Q19642 /GB=AAA81674.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068926 NCBI Caenorhabditis elegans Caenorhabditis Zeste White 10 (Drosophila) homolog family member (czw-1) (czw-1) mRNA, complete cds. 11/11 A 
SNAP00000004278 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7943738:7946558:-1 11/11 None
GENEFINDER00000004288 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7943738:7946558:-1 11/11 None
F20D12.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:7943609:7946786:-1 gene:F20D12.4 11/11 A 
F20D12.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:7943609:7946575:-1 gene:F20D12.4 11/11 A 
F20D12.4.3 ENSEMBL cdna:known chromosome:CEL140:IV:7943609:7946802:-1 gene:F20D12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7943743-7946564(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol czw-1
Ensembl F20D12.4
Entrez Gene 177587 Entrez gene
SwissProt Q19642 EMBL-EBI
WormBase CE04434 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:267603_AT centromere/kinetochore protein, putative (ZW10) at
CANINE:1585593_AT similar to Centromere/kinetochore protein zw10 homolog cfa
CANINE_2:CFA.9032.1.A1_AT similar to Centromere/kinetochore protein zw10 homolog cfa
CANINE_2:CFAAFFX.21190.1.S1_S_AT similar to Centromere/kinetochore protein zw10 homolog cfa
DROSOPHILA_2:1634604_AT mitotic 15 dm
DROSGENOME1:141713_AT mitotic 15 dm
CHICKEN:GGA.4252.1.S1_AT ZW10, kinetochore associated, homolog (Drosophila) gga
CHICKEN:GGA.4252.1.S2_AT ZW10, kinetochore associated, homolog (Drosophila) gga
HG-U133_PLUS_2:204812_AT ZW10, kinetochore associated, homolog (Drosophila) hs
HG-U133A:204812_AT ZW10, kinetochore associated, homolog (Drosophila) hs
HG-FOCUS:204812_AT ZW10, kinetochore associated, homolog (Drosophila) hs
HG-U133A_2:204812_AT ZW10, kinetochore associated, homolog (Drosophila) hs
U133_X3P:G4759343_3P_AT ZW10, kinetochore associated, homolog (Drosophila) hs
HG-U95AV2:37854_AT ZW10, kinetochore associated, homolog (Drosophila) hs
MOUSE430_2:1424891_A_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOE430A:1424891_A_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOUSE430A_2:1424891_A_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MU11KSUBA:C79507_RC_F_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MU11KSUBA:AF003951_G_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MU11KSUBA:AF003951_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MG-U74AV2:104757_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MG-U74CV2:137018_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOE430B:1431747_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOUSE430_2:1431747_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOE430B:1445206_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
MOUSE430_2:1445206_AT ZW10 homolog (Drosophila), centromere/kinetochore protein mm
RG-U34C:RC_AI230413_AT ZW10 homolog, centromere/kinetochore protein (Drosophila) (predicted) rn
RAE230A:1374938_AT ZW10 homolog, centromere/kinetochore protein (Drosophila) (predicted) rn
RAT230_2:1374938_AT ZW10 homolog, centromere/kinetochore protein (Drosophila) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA81674 Caenorhabditis zeste white 10 (drosophila) homolog protein 1 [Caenorhabditis elegans] ref|NP_501327.1| Caenorhabditis Zeste White 10 (Drosophila) homolog family member (czw-1) [Caenorhabditis elegans] 0.0
blast CAE70918 Hypothetical protein CBG17717 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009361 EMBL-EBI Centromerekinetochore Zw10 1.0E-126
Pfam IPR009361 EMBL-EBI Centromerekinetochore Zw10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185228_S_AT
gacactgacaagatgccgtcgcgaaatgactgcttatttggaggatcatagcatctttga
acacttgcctgcaagttataagactacaaagaatacatttgctgctgctgaagagatgtc
cgagtcggctgatattcttgttccgagagaagagccaaaaattatcaaatgtcttgccgc
ctgccttcttcatattcgccttattgcaaaaaatcttcgtgaacctttgactgaggtggt
atactgtaaggtgattggatcactcgtctcgttcctgttggattctcttgtgcgccacgt
tgtcaccacttccgatttccgcgaaaatgatgctaacgtgatggctgacgttttcaaaag
acttttggaagttgttgccaatattgtcgcctataaggagcagacaaaagtgaccgattt
ctgtgctcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTGACAAGATGCCGTCGCGAA 520 367 1737 Antisense
GCCGTCGCGAAATGACTGCTTATTT 316 283 1751 Antisense
TAGCATCTTTGAACACTTGCCTGCA 595 651 1785 Antisense
GCTGCTGAAGAGATGTCCGAGTCGG 305 297 1840 Antisense
TCCGAGTCGGCTGATATTCTTGTTC 271 593 1855 Antisense
AAATTATCAAATGTCTTGCCGCCTG 505 115 1895 Antisense
TTCTTCATATTCGCCTTATTGCAAA 573 689 1922 Antisense
AGGTGATTGGATCACTCGTCTCGTT 85 59 1985 Antisense
CGTTCCTGTTGGATTCTCTTGTGCG 429 247 2006 Antisense
GTTGTTGCCAATATTGTCGCCTATA 428 437 2107 Antisense
AAGTGACCGATTTCTGTGCTCGAGA 344 159 2144 Antisense
Sequence Source Affymetrix Proprietary Database