[Home] | [Total List]

[185227_at]

Description F19F10.4 /REP_DB=WormBase Gene ID /WP=CE09484 /TR=O01517 /GB=AAB52282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 476
1 2 3 4 range
A 213.8
(-1.9)
P 		185
(-2.3)
P 		142.4
(-3)
P 		533.2
(3)
P 		391
B 234.8
(-1.6)
P 		174.3
(-2.4)
P 		130.2
(-3)
P 		577.9
(3)
P 		448
C 253.8
(-1.8)
P 		303.1
(-1.1)
P 		167.9
(-3)
P 		606.2
(3)
P 		438
avr 234.1
(-1.8) 		220.8
(-2) 		146.8
(-3) 		572.4
(3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 171.2
(3)
P 		106.1
(-3)
P 		114.6
(-2.2)
P 		129.8
(-0.8)
P 		168.4
(2.7)
P 		134.8
(-0.4)
P 		65
B 137.2
(0.5)
P 		162.4
(2.2)
P 		83.6
(-3)
P 		134.2
(0.4)
P 		174.2
(3)
P 		113.6
(-1)
P 		91
C 91.3
(-2)
P 		188.7
(3)
P 		71.3
(-3)
P 		185
(2.8)
P 		138.3
(0.4)
P 		120.4
(-0.5)
P 		117
avr 133.2
(0.7) 		152.4
(2.3) 		89.8
(-3) 		149.7
(2.1) 		160.3
(3) 		122.9
(-0.2) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 77.9
(3)
P 		40.1
(-2.6)
P 		37.2
(-3)
P 		78.1
(3)
P 		41
B 74.9
(-0.1)
P 		43
(-2.2)
P 		30.2
(-3)
P 		123.1
(3)
P 		93
C 84
(0.5)
P 		87.1
(0.9)
P 		58.5
(-3)
P 		102.2
(3)
P 		44
avr 78.9
(0.7) 		56.7
(-1.5) 		42
(-3) 		101.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 31.6
(-1.5)
P 		37.7
(-0)
P 		25
(-3)
P 		32.9
(-1.2)
P 		50.8
(3)
P 		32.8
(-1.2)
P 		26
B 47.7
(0.3)
P 		54.1
(1)
P 		20.3
(-3)
P 		35.5
(-1.2)
P 		70.8
(3)
P 		42.4
(-0.4)
P 		51
C 33.9
(-0.6)
P 		57.6
(3)
P 		18.1
(-3)
P 		37.2
(-0.1)
P 		44.7
(1)
P 		40.3
(0.4)
P 		40
avr 37.7
(-0.1) 		49.8
(2) 		21.1
(-3) 		35.2
(-0.5) 		55.4
(3) 		38.5
(0) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185227_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11556
Sequence Type Exemplar sequence
Representative Public ID F19F10.4 NCBI
Target Description F19F10.4 /REP_DB=WormBase Gene ID /WP=CE09484 /TR=O01517 /GB=AAB52282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072545(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072545 NCBI Caenorhabditis elegans F19F10.4 (F19F10.4) mRNA, complete cds. 10/11 None
SNAP00000016026 ENSEMBL cdna:SNAP chromosome:CEL140:V:7555487:7556254:-1 9/11 None
GENEFINDER00000016041 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7555487:7556542:-1 11/11 None
F19F10.4 ENSEMBL cdna:known chromosome:CEL140:V:7555487:7556515:-1 gene:F19F10.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7555487-7556543(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.4
Entrez Gene 184686 Entrez gene
SwissProt O01517 EMBL-EBI
WormBase CE35279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52282 Hypothetical protein F19F10.4 [Caenorhabditis elegans] ref|NP_504946.2| F19F10.4 [Caenorhabditis elegans] 2.0E-86
blast AAB52282 Hypothetical protein F19F10.4 [Caenorhabditis elegans] ref|NP_504946.2| F19F10.4 [Caenorhabditis elegans] 8.0E-84
blast CAE57805 Hypothetical protein CBG00829 [Caenorhabditis briggsae] 7.0E-21
blast CAE57805 Hypothetical protein CBG00829 [Caenorhabditis briggsae] 8.0E-21
blast CAA92798 Hypothetical protein C33A12.15 [Caenorhabditis elegans] ref|NP_501683.2| C33A12.15 [Caenorhabditis elegans] 2.0E-19
blast CAE57118 Hypothetical protein CBG25028 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 7.8E-46
Pfam IPR001534 EMBL-EBI Transthyretin-like 7.8E-46
Sequence
Target Sequence 
>C. ELEGANS:185227_AT
tgtgttcctttcaatttttgctgcccctgatcaagctgaacaaggaaccagtattttcca
agaatttttgtcatttttcataggttgtttgcgctggcaagtcttaaaatatatattgct
catttctcttgggttccctattgtcaattccattggcgaaggatcgttccacgtcagcgg
tcgcttgatgtgcggtgggaagccatacgccaatgaaagtgtttccatctatgagaaaaa
ctacatgttaaccgatattctgatggaatcactttttactgatgaagatggaaacttctc
tgttaaaacttttggaaaagactggccccacttcacaccttatctctacgcgccaaatta
ttgtaaaccagttgataactttgtctttgcggacagagaatgcacagactcggctttgca
aatcttgattccaacagaatttgtttccccaacacgtactccaaccaagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGTTCCTTTCAATTTTTGCTGCC 640 555 18 Antisense
TTTTCATAGGTTGTTTGCGCTGGCA 123 677 92 Antisense
TCTTGGGTTCCCTATTGTCAATTCC 252 617 144 Antisense
ATTGGCGAAGGATCGTTCCACGTCA 154 3 169 Antisense
CCACGTCAGCGGTCGCTTGATGTGC 319 275 186 Antisense
TGTGCGGTGGGAAGCCATACGCCAA 259 557 206 Antisense
TTTGGAAAAGACTGGCCCCACTTCA 279 663 328 Antisense
CTTATCTCTACGCGCCAAATTATTG 173 219 356 Antisense
AGTTGATAACTTTGTCTTTGCGGAC 574 63 387 Antisense
GCACAGACTCGGCTTTGCAAATCTT 19 317 419 Antisense
CCAACACGTACTCCAACCAAGATTT 702 273 466 Antisense
Sequence Source Affymetrix Proprietary Database