[Home] | [Total List]

[185226_at]

Description C37C3.11 /REP_DB=WormBase Gene ID /WP=CE06936 /TR=Q22921 /GB=AAC25865.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 06      4grp_high_8_8 > 18      6grp_total > 05      4grp_total > 30      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 224.5
(3)
P 		175.6
(0.9)
P 		81.9
(-3)
P 		203.3
(2.1)
P 		143
B 234.2
(3)
P 		137.7
(-1.2)
P 		95.7
(-3)
A 		200.4
(1.5)
A 		139
C 309.4
(3)
P 		137.8
(-1.1)
P 		57.7
(-3)
P 		159.7
(-0.6)
A 		252
avr 256
(3) 		150.4
(-0.6) 		78.4
(-3) 		187.8
(0.7) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 315.4
(3)
P 		181.6
(-0.2)
P 		212.4
(0.5)
P 		136.5
(-1.3)
P 		121.7
(-1.7)
A 		66.5
(-3)
A 		249
B 283.2
(3)
P 		207.9
(0.7)
P 		98.8
(-2.5)
P 		144.1
(-1.2)
P 		167.3
(-0.5)
M 		83.6
(-3)
P 		200
C 250.9
(3)
P 		164.7
(0.3)
P 		130.5
(-0.8)
A 		115.8
(-1.3)
P 		111.9
(-1.4)
P 		60.6
(-3)
A 		190
avr 283.2
(3) 		184.7
(0.2) 		147.2
(-0.8) 		132.1
(-1.3) 		133.6
(-1.2) 		70.2
(-3) 		213
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 81.8
(3)
P 		38.1
(-1.3)
P 		21.4
(-3)
P 		29.8
(-2.2)
P 		60
B 74.7
(3)
P 		34
(-1.7)
P 		22.2
(-3)
A 		42.7
(-0.7)
A 		53
C 102.4
(3)
P 		39.6
(-1.6)
P 		20.1
(-3)
P 		26.9
(-2.5)
A 		82
avr 86.3
(3) 		37.2
(-1.5) 		21.2
(-3) 		33.1
(-1.9) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 58.1
(2.2)
P 		64.6
(3)
P 		46.3
(0.7)
P 		34.6
(-0.7)
P 		36.7
(-0.5)
A 		16.2
(-3)
A 		48
B 98.6
(3)
P 		69.2
(0.6)
P 		24
(-3)
P 		38.2
(-1.9)
P 		68
(0.5)
M 		31.2
(-2.4)
P 		75
C 93
(3)
P 		50.3
(-0.5)
P 		33.2
(-1.9)
A 		23.3
(-2.8)
P 		36.2
(-1.7)
P 		20.3
(-3)
A 		73
avr 83.2
(3) 		61.4
(0.8) 		34.5
(-1.8) 		32
(-2.1) 		47
(-0.6) 		22.6
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11496
Sequence Type Exemplar sequence
Representative Public ID C37C3.11 NCBI
Target Description C37C3.11 /REP_DB=WormBase Gene ID /WP=CE06936 /TR=Q22921 /GB=AAC25865.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072626(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072626 NCBI Caenorhabditis elegans C37C3.11 (C37C3.11) mRNA, complete cds. 11/11 None
SNAP00000006085 ENSEMBL cdna:SNAP chromosome:CEL140:V:7866188:7867323:-1 11/11 None
GENEFINDER00000006091 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7866188:7867323:-1 11/11 None
C37C3.11 ENSEMBL cdna:known chromosome:CEL140:V:7866188:7867323:-1 gene:C37C3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7866188-7867324(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C37C3.11
Entrez Gene 183291 Entrez gene
SwissProt Q22921 EMBL-EBI
WormBase CE06936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25865 Hypothetical protein C37C3.11 [Caenorhabditis elegans] ref|NP_505027.1| C37C3.11 [Caenorhabditis elegans] 5.0E-85
blast CAE73164 Hypothetical protein CBG20559 [Caenorhabditis briggsae] 1.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505027.1 4 21-43,53-75,88-110,125-144
C37C3.11 4 21-43,53-75,88-110,125-144
SNAP00000006085 4 21-43,53-75,88-110,125-144
GENEFINDER00000006091 4 21-43,53-75,88-110,125-144
Sequence
Target Sequence 
>C. ELEGANS:185226_AT
atatgtgctcattctcactctatgcatctacagtaatcatggcggttctacagacaatac
tctccgccttattagcaattctgtaccgcgtcaaaatcgaaggggatagtgtgattgtgc
gtatactcttctggatccacgtgtcttgctccatatcagctcttttgttttcagtatttt
gcctcttcaaacgaaaaataggatccacttatgaagttgtgcttcatggttatttgctaa
gtgtgctcatcaatggacttactgctctattcggagtactctacgtcccattgttcttcc
ttcaaacatcacattctctaatggaaggcctggactatttcatatgtttcagcctgtcgg
gagtacttctcttccttcaatgggctgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATGTGCTCATTCTCACTCTATGC 539 19 56 Antisense
GGCGGTTCTACAGACAATACTCTCC 222 541 96 Antisense
TACTCTCCGCCTTATTAGCAATTCT 139 647 113 Antisense
AGCAATTCTGTACCGCGTCAAAATC 45 77 129 Antisense
GTGTGATTGTGCGTATACTCTTCTG 279 487 164 Antisense
TATACTCTTCTGGATCCACGTGTCT 175 661 177 Antisense
CTCCATATCAGCTCTTTTGTTTTCA 388 235 204 Antisense
CAATGGACTTACTGCTCTATTCGGA 456 183 306 Antisense
TATTCGGAGTACTCTACGTCCCATT 445 659 323 Antisense
TGTTTCAGCCTGTCGGGAGTACTTC 661 559 400 Antisense
TTCTCTTCCTTCAATGGGCTGTCAA 183 693 422 Antisense
Sequence Source Affymetrix Proprietary Database