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[185225_at]

Description F19F10.6 /REP_DB=WormBase Gene ID /WP=CE09486 /TR=O01520 /GB=AAB52284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 29.3
(-1.9)
A 		38
(-1.2)
A 		16.8
(-3)
A 		87
(3)
P 		70
B 50.1
(2.9)
A 		20.7
(-2.1)
A 		15.3
(-3)
A 		50.7
(3)
A 		35
C 34.6
(-2)
A 		23.8
(-2.4)
A 		9
(-3)
A 		162.5
(3)
P 		154
avr 38
(-1.3) 		27.5
(-2) 		13.7
(-3) 		100.1
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 12.9
(-2.1)
A 		11.6
(-2.3)
A 		13.7
(-2)
A 		6.4
(-3)
A 		49.5
(3)
A 		6.2
(-3)
A 		43
B 35.9
(3)
A 		5.4
(-2.8)
A 		29
(1.7)
A 		14.5
(-1.1)
A 		12
(-1.5)
A 		4.2
(-3)
A 		32
C 43.6
(0.9)
A 		64.7
(3)
A 		7.7
(-2.7)
A 		19.3
(-1.5)
A 		12.5
(-2.2)
A 		4.7
(-3)
A 		60
avr 30.8
(3) 		27.2
(2.2) 		16.8
(-0.3) 		13.4
(-1) 		24.7
(1.6) 		5
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 10.7
(1.6)
A 		8.3
(-0.2)
A 		4.4
(-3)
A 		12.7
(3)
P 		8
B 16
(3)
A 		5.1
(-2.2)
A 		3.5
(-3)
A 		10.8
(0.5)
A 		13
C 11.4
(-1)
A 		6.8
(-2.1)
A 		3.2
(-3)
A 		27.4
(3)
P 		24
avr 12.7
(1.1) 		6.7
(-1.6) 		3.7
(-3) 		17
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.4
(-2.6)
A 		4.1
(-1.8)
A 		3
(-2.3)
A 		1.6
(-3)
A 		14.9
(3)
A 		1.5
(-3)
A 		13
B 12.5
(3)
A 		1.8
(-2.9)
A 		7
(-0)
A 		3.8
(-1.8)
A 		4.9
(-1.2)
A 		1.6
(-3)
A 		11
C 16.2
(1.8)
A 		19.7
(3)
A 		2
(-2.9)
A 		3.9
(-2.2)
A 		4.1
(-2.2)
A 		1.6
(-3)
A 		18
avr 10.4
(3) 		8.5
(1.7) 		4
(-1.4) 		3.1
(-2) 		8
(1.4) 		1.6
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185225_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11802
Sequence Type Exemplar sequence
Representative Public ID F19F10.6 NCBI
Target Description F19F10.6 /REP_DB=WormBase Gene ID /WP=CE09486 /TR=O01520 /GB=AAB52284.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072547 NCBI Caenorhabditis elegans F19F10.6 (F19F10.6) mRNA, complete cds. 11/11 None
F19F10.6 ENSEMBL cdna:known chromosome:CEL140:V:7562846:7564207:-1 gene:F19F10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016029 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016043 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7562846-7564208(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.6
Entrez Gene 184688 Entrez gene
SwissProt O01520 EMBL-EBI
WormBase CE09486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52284 Hypothetical protein F19F10.6 [Caenorhabditis elegans] ref|NP_504948.1| F19F10.6 [Caenorhabditis elegans] 1.0E-120
blast CAE57810 Hypothetical protein CBG00834 [Caenorhabditis briggsae] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:185225_AT
gtcggtctacaccagttttgtgaactgtactgttaaatgtggacaagacgataactgcca
ggtttcaaatgattcagacaattataaaagagaaaggtgctcagttcttcggcttcccaa
tttgaacgatgtctcaacttcaaaaggacaccgttcatctactcaatctgaatacaaatt
ggagaaaaccaccccaactcccaaaagattcggatgtcctcaaaattttcaactatttca
aagacccaatattgcttggtgcattgcagtagttgtaaacttcaattattggtatgttac
taaaaatactgcaatcaatatatgcaaaaactttggtggtcagttatcaggcccggctag
tctggacgaaaaagtatttattcaaagtaagttcattccgcgtttgttgcatgttgtggc
gtttgaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGTCTACACCAGTTTTGTGAAC 666 469 66 Antisense
GACAAGACGATAACTGCCAGGTTTC 360 365 107 Antisense
GAGAAAGGTGCTCAGTTCTTCGGCT 72 393 155 Antisense
TTCTTCGGCTTCCCAATTTGAACGA 83 689 170 Antisense
GAACGATGTCTCAACTTCAAAAGGA 646 347 189 Antisense
CAAAAGGACACCGTTCATCTACTCA 244 191 206 Antisense
CCCCAACTCCCAAAAGATTCGGATG 399 261 257 Antisense
TTTGGTGGTCAGTTATCAGGCCCGG 45 663 397 Antisense
GGCCCGGCTAGTCTGGACGAAAAAG 10 543 415 Antisense
GTAAGTTCATTCCGCGTTTGTTGCA 9 463 452 Antisense
GTTGCATGTTGTGGCGTTTGAATTC 139 439 471 Antisense
Sequence Source Affymetrix Proprietary Database