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[185224_at]

Description W02D3.10 /REP_DB=WormBase Gene ID /WP=CE14436 /TR=O01817 /GB=AAK21488.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 50.2
(0.5)
P 		19
(-3)
A 		54
(0.9)
A 		72.9
(3)
A 		54
B 55.4
(3)
A 		30.3
(-3)
A 		44.7
(0.4)
A 		46.1
(0.8)
A 		25
C 84.4
(2.9)
M 		50.1
(-1.1)
A 		33.8
(-3)
A 		85.4
(3)
A 		52
avr 63.3
(2.2) 		33.1
(-3) 		44.2
(-1.1) 		68.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 61.1
(3)
A 		26.1
(-0.9)
A 		51.5
(1.9)
A 		6.6
(-3)
A 		59
(2.8)
A 		30.2
(-0.4)
A 		55
B 65.1
(2.7)
A 		59.1
(2)
A 		17.8
(-3)
A 		26.6
(-1.9)
A 		22.9
(-2.4)
A 		67.2
(3)
A 		49
C 67.6
(0.2)
P 		91.4
(3)
A 		53.4
(-1.5)
M 		58.3
(-1)
A 		41.2
(-3)
A 		57.7
(-1)
A 		50
avr 64.6
(3) 		58.9
(2) 		40.9
(-1.2) 		30.5
(-3) 		41
(-1.2) 		51.7
(0.7) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18.3
(3)
P 		4.1
(-3)
A 		14.1
(1.2)
A 		10.7
(-0.2)
A 		14
B 17.7
(3)
A 		7.5
(-3)
A 		10.4
(-1.3)
A 		9.8
(-1.6)
A 		10
C 27.9
(3)
M 		14.4
(-2)
A 		11.8
(-3)
A 		14.4
(-2)
A 		16
avr 21.3
(3) 		8.7
(-3) 		12.1
(-1.4) 		11.6
(-1.6) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.3
(0.6)
A 		9.3
(-0.2)
A 		11.2
(0.5)
A 		1.7
(-3)
A 		17.8
(3)
A 		7.4
(-0.9)
A 		16
B 22.6
(2.3)
A 		19.7
(1.5)
A 		4.3
(-3)
A 		7
(-2.2)
A 		9.3
(-1.6)
A 		25
(3)
A 		21
C 25
(1.9)
P 		27.9
(3)
A 		13.6
(-2.3)
M 		11.7
(-3)
A 		13.3
(-2.4)
A 		19.3
(-0.2)
A 		16
avr 19.6
(3) 		19
(2.7) 		9.7
(-1.6) 		6.8
(-3) 		13.5
(0.1) 		17.2
(1.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185224_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2133
Sequence Type Exemplar sequence
Representative Public ID W02D3.10 NCBI
Target Description W02D3.10 /REP_DB=WormBase Gene ID /WP=CE14436 /TR=O01817 /GB=AAK21488.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026481 NCBI Caenorhabditis elegans W02D3.10a (W02D3.10) mRNA, complete cds. 11/11 None
GENEFINDER00000042731 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6754466:6761165:-1 11/11 None
SNAP00000042724 ENSEMBL cdna:SNAP chromosome:CEL140:I:6755369:6761165:-1 11/11 None
W02D3.10a ENSEMBL cdna:known chromosome:CEL140:I:6754466:6761150:-1 gene:W02D3.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
189113 2 1 NM_001026481 185224_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6754394-6761079(-) 99.1 100.0
Public Domain and Genome References
Ensembl W02D3.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68909 Hypothetical protein W02D3.10a [Caenorhabditis elegans] ref|NP_001021652.1| W02D3.10a [Caenorhabditis elegans] 0.0
blast T15212 hypothetical protein W02D3.10 - Caenorhabditis elegans 0.0
blast CAE60443 Hypothetical protein CBG04051 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185224_AT
gaaatgtccgaatggcagagtacaaatattcttgccacgttggtaaagacaaaattaagg
ccgattcttgcgatggtggacgatcatattggattctcgaaaggaaaagatgaaatgaag
aaaaagatttcacagaaaacaagatatgcaaaatcgaaacgagacgaaaaactattttca
aagttttcacacgaaagagaagctgttcaacatggaattcttgttctttgtaagctcatt
aaagatgatcgatttgatcttcagatcaagacattttcaaaaatatttttaaagaacaat
tcaattggatatcgtgacttccgaatcgatatggaagttcttcgcaacaaattgagcggg
caagctaatgaagaagtttgtgaaccagccaccaaacgaggccgtagggacccaagtatg
gaagatgaagaaatagaagaaactgaagagagtacaacatctgcaagaagaagctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGTCCGAATGGCAGAGTACAA 323 361 3766 Antisense
GTACAAATATTCTTGCCACGTTGGT 284 461 3785 Antisense
TAAGGCCGATTCTTGCGATGGTGGA 435 637 3821 Antisense
GGTGGACGATCATATTGGATTCTCG 486 499 3840 Antisense
GAATTCTTGTTCTTTGTAAGCTCAT 202 325 3980 Antisense
TTGGATATCGTGACTTCCGAATCGA 388 707 4070 Antisense
GTTCTTCGCAACAAATTGAGCGGGC 692 443 4102 Antisense
AGAAGTTTGTGAACCAGCCACCAAA 376 75 4137 Antisense
CCAGCCACCAAACGAGGCCGTAGGG 235 271 4150 Antisense
GAGGCCGTAGGGACCCAAGTATGGA 579 385 4163 Antisense
CAACATCTGCAAGAAGAAGCTCCGA 642 187 4220 Antisense
Sequence Source Affymetrix Proprietary Database