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[185222_at]

Description Y57A10A.4 /REP_DB=WormBase Gene ID /WP=CE22605 /TR=Q9NA88 /GB=CAB55009.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 16      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 5
(-2.3)
A
0.9
(-3)
A
0.9
(-3)
A
38.7
(3)
A
38
B 0.5
(-3)
A
4
(-2.3)
A
31.1
(3)
A
4.5
(-2.2)
A
31
C 4.1
(-3)
A
15.6
(-0.1)
A
4.7
(-2.8)
A
28
(3)
A
24
avr 3.2
(-3)
6.8
(-1.9)
12.2
(-0.4)
23.7
(3)
21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 8.4
(-1.9)
A
10
(-1.7)
A
0.9
(-3)
A
31.4
(1.3)
A
32.7
(1.5)
A
43.3
(3)
A
42
B 4.3
(-2.1)
A
1
(-3)
A
8.2
(-1.1)
A
23.7
(3)
A
12
(-0.1)
A
4.7
(-2)
A
23
C 12.5
(-0.5)
A
8.2
(-1.4)
A
2.2
(-2.8)
A
27.9
(3)
A
1.2
(-3)
A
14.6
(0)
A
27
avr 8.4
(-1.8)
6.4
(-2.3)
3.8
(-3)
27.7
(3)
15.3
(-0.1)
20.9
(1.3)
24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.8
(-1.3)
A
0.2
(-3)
A
0.2
(-3)
A
5.7
(3)
A
6
B 0.2
(-3)
A
1
(-2.3)
A
7.2
(3)
A
1
(-2.3)
A
7
C 1.4
(-3)
A
4.5
(2.6)
A
1.6
(-2.6)
A
4.7
(3)
A
3
avr 1.1
(-3)
1.9
(-1.2)
3
(1.2)
3.8
(3)
3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.6
(-2.2)
A
3.5
(-1.1)
A
0.2
(-3)
A
8
(1.5)
A
9.9
(2.7)
A
10.5
(3)
A
10
B 1.5
(-1.8)
A
0.3
(-3)
A
2
(-1.3)
A
6.3
(3)
A
4.9
(1.6)
A
1.7
(-1.6)
A
6
C 4.6
(1.8)
A
2.5
(-0.6)
A
0.6
(-2.8)
A
5.6
(3)
A
0.4
(-3)
A
4.9
(2.2)
A
5
avr 2.6
(-1.2)
2.1
(-1.7)
0.9
(-3)
6.6
(3)
5.1
(1.4)
5.7
(2.1)
6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3609
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.4 NCBI
Target Description Y57A10A.4 /REP_DB=WormBase Gene ID /WP=CE22605 /TR=Q9NA88 /GB=CAB55009.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064183(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_064183 NCBI Caenorhabditis elegans Y57A10A.4 (Y57A10A.4) mRNA, complete cds. 11/11 None
SNAP00000026015 ENSEMBL cdna:SNAP chromosome:CEL140:II:12151419:12154159:1 11/11 None
GENEFINDER00000026066 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12151871:12154159:1 11/11 None
Y57A10A.4 ENSEMBL cdna:known chromosome:CEL140:II:12151871:12154159:1 gene:Y57A10A.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064182 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12151867-12154156(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.4
Entrez Gene 190333 Entrez gene
SwissProt Q9NA88 EMBL-EBI
WormBase CE22605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55009 Hypothetical protein Y57A10A.4 [Caenorhabditis elegans] ref|NP_496584.1| Y57A10A.4 [Caenorhabditis elegans] 0.0
blast CAB07287 Hypothetical protein T28A8.3 [Caenorhabditis elegans] ref|NP_499795.1| T28A8.3 [Caenorhabditis elegans] 1.0E-152
blast CAB07287 Hypothetical protein T28A8.3 [Caenorhabditis elegans] ref|NP_499795.1| T28A8.3 [Caenorhabditis elegans] 1.0E-147
blast CAB55010 Hypothetical protein Y57A10A.5 [Caenorhabditis elegans] ref|NP_496585.1| Y57A10A.5 [Caenorhabditis elegans] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 1.4E-64
Pfam IPR006570 EMBL-EBI SPK 9.6E-61
Pfam IPR006570 EMBL-EBI SPK 1.4E-57
Pfam IPR006570 EMBL-EBI SPK 9.6E-61
Sequence
Target Sequence
>C. ELEGANS:185222_AT
ttgaatcctccattcgaaagtgacgatgaggaggtgaagtatattggagcagtgaaggga
cagccaaagccgggaccgattgaatccgtatttgatcaaatcaataatcgagatcatttc
caaggaaatcaagaatacagaaatcagtcaatttctgaaagaaaagttgatgtcccacta
ttcgtcgaacatcaacaaatcagtctttccgcggaaaatcgagccacttcagctgaatgg
aaatccatatttctgcatgatttcctgaaacagctgacacaattcatttgttttttcgaa
tgttcggagctagctgagatcaagcgaaatatcaaggaagtgatggctgatgagggaaaa
atttcctcttttcaaaaattagaaatcattgatattcgtacagttctcggtgcattcttc
ttcggagttagccgaaaaatcaaatcaactggatcgaataattctacaatgaaggccaaa
gatttcctggtcacgttcaagtacttccttctcggattggatttttccgagcttctggag
ctcagcacagtgttcaagagaaaattgacgagttctcatgtacagcg


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TTGAATCCTCCATTCGAAAGTGACG 164 705 1273 Antisense
GACAGCCAAAGCCGGGACCGATTGA 237 365 1331 Antisense
GACCGATTGAATCCGTATTTGATCA 188 381 1346 Antisense
AAAGTTGATGTCCCACTATTCGTCG 4 123 1435 Antisense
ATGTCCCACTATTCGTCGAACATCA 51 47 1442 Antisense
TTCCGCGGAAAATCGAGCCACTTCA 534 695 1479 Antisense
CCACTTCAGCTGAATGGAAATCCAT 258 275 1496 Antisense
ATGGAAATCCATATTTCTGCATGAT 202 53 1509 Antisense
GATTTCCTGAAACAGCTGACACAAT 504 427 1531 Antisense
CTGACACAATTCATTTGTTTTTTCG 25 235 1546 Antisense
AATTGACGAGTTCTCATGTACAGCG 165 179 1835 Antisense
Sequence Source Affymetrix Proprietary Database