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[185219_at]

Description F53E10.5 /REP_DB=WormBase Gene ID /WP=CE10928 /TR=P91317 /GB=AAB42291.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 41.7
(-1.9)
A 		29.9
(-3)
A 		57.7
(-0.4)
A 		94.6
(3)
A 		65
B 50.4
(-0.1)
A 		40.6
(-1.5)
A 		73.2
(3)
P 		29.6
(-3)
A 		44
C 39.8
(-2.5)
A 		46.1
(-0.9)
A 		37.9
(-3)
A 		61
(3)
P 		23
avr 44
(-1.7) 		38.9
(-3) 		56.3
(1.6) 		61.7
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 24.5
(-2.4)
A 		51.1
(3)
A 		21.6
(-3)
A 		43.5
(1.5)
A 		47.2
(2.2)
M 		47.7
(2.3)
A 		30
B 38.1
(2.6)
A 		15
(-3)
A 		33.7
(1.5)
A 		39.9
(3)
A 		28.5
(0.3)
A 		32.2
(1.1)
A 		25
C 62.7
(3)
A 		42.4
(0.9)
A 		55.9
(2.3)
A 		48.7
(1.5)
A 		6
(-3)
A 		23.1
(-1.2)
A 		57
avr 41.8
(2.2) 		36.2
(0.2) 		37.1
(0.5) 		44
(3) 		27.2
(-3) 		34.3
(-0.5) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 15.2
(3)
A 		6.5
(-3)
A 		15.1
(2.9)
A 		13.8
(2)
A 		9
B 16.1
(2.5)
A 		10
(-0.9)
A 		17
(3)
P 		6.3
(-3)
A 		11
C 13.2
(2.8)
A 		13.3
(3)
A 		13.2
(2.8)
A 		10.3
(-3)
P 		3
avr 14.8
(2.7) 		9.9
(-3) 		15.1
(3) 		10.1
(-2.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.5
(-3)
A 		18.2
(3)
A 		4.7
(-2.9)
A 		11
(-0.2)
A 		14.2
(1.2)
M 		11.6
(0.1)
A 		14
B 13.2
(3)
A 		5
(-3)
A 		8.2
(-0.7)
A 		10.6
(1.1)
A 		11.6
(1.8)
A 		12
(2.1)
A 		8
C 23.2
(3)
A 		12.9
(0.1)
A 		14.2
(0.5)
A 		9.8
(-0.8)
A 		2
(-3)
A 		7.7
(-1.4)
A 		21
avr 13.6
(3) 		12
(0.9) 		9
(-3) 		10.5
(-1) 		9.3
(-2.6) 		10.4
(-1.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185219_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14911
Sequence Type Exemplar sequence
Representative Public ID F53E10.5 NCBI
Target Description F53E10.5 /REP_DB=WormBase Gene ID /WP=CE10928 /TR=P91317 /GB=AAB42291.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071311(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071311 NCBI Caenorhabditis elegans F53E10.5 (F53E10.5) mRNA, complete cds. 11/11 None
GENEFINDER00000043467 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2594924:2598757:-1 9/11 None
F53E10.5 ENSEMBL cdna:known chromosome:CEL140:V:2595847:2598757:-1 gene:F53E10.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043461 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2595846-2598757(-) 88.21 100.0
Public Domain and Genome References
Gene Title
Ensembl F53E10.5
Entrez Gene 186167 Entrez gene
SwissProt P91317 EMBL-EBI
WormBase CE10928 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42291 Hypothetical protein F53E10.5 [Caenorhabditis elegans] ref|NP_503712.1| F53E10.5 [Caenorhabditis elegans] 0.0
blast AAB42291 Hypothetical protein F53E10.5 [Caenorhabditis elegans] ref|NP_503712.1| F53E10.5 [Caenorhabditis elegans] 5.0E-94
blast CAA22092 Hypothetical protein Y75B8A.32 [Caenorhabditis elegans] ref|NP_499605.1| Y75B8A.32 [Caenorhabditis elegans] 4.0E-53
blast CAA22092 Hypothetical protein Y75B8A.32 [Caenorhabditis elegans] ref|NP_499605.1| Y75B8A.32 [Caenorhabditis elegans] 2.0E-19
blast CAA86856 Hypothetical protein R03D7.2 [Caenorhabditis elegans] ref|NP_496354.1| R03D7.2 [Caenorhabditis elegans] 3.0E-12
blast CAB54500 Hypothetical protein Y75B8A.35a [Caenorhabditis elegans] ref|NP_499602.3| bZIP transcription factor family member (zip-1) [Caenorhabditis elegans] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:185219_AT
cattttgaaatgacgctgccggtttttcaggaacatcaagtaatgattcattgtcaagct
aaccaacctttcaaaccgagacacagaattaagaaaaccgaattgctgatgttggacttt
attggaacactccaacaagaaaaagctaggcgaataaatgaaatcacggaggaaaacaag
gagaatattgaacatctacaaaaaatgtctacaaccgctgagaaactattgaatgatttg
aaaaataataaagcaccaaatgatgaaaaaggaaaaatgacgataaaaggaacaaaggga
tcaagaaaaactcgcgcgaagcaaagtgctgagtcgaagacattagcatacaagataaga
ctaggagaagtcgaaatcgaaaagtttcaagcaatatcggaaacattggagcagattgca
aagaatgtcgctcagttcgtattggaaaatggcattccagctaattatttctatgagaga
ccattgcacactgaagatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTGAAATGACGCTGCCGGTTT 660 215 472 Antisense
ACGCTGCCGGTTTTTCAGGAACATC 279 87 484 Antisense
TCATTGTCAAGCTAACCAACCTTTC 466 619 519 Antisense
CCAACCTTTCAAACCGAGACACAGA 686 275 534 Antisense
ACCGAATTGCTGATGTTGGACTTTA 67 89 568 Antisense
AAATGTCTACAACCGCTGAGAAACT 111 119 674 Antisense
GGATCAAGAAAAACTCGCGCGAAGC 549 509 769 Antisense
AGCAAAGTGCTGAGTCGAAGACATT 683 75 791 Antisense
GAATGTCGCTCAGTTCGTATTGGAA 82 333 894 Antisense
ATGGCATTCCAGCTAATTATTTCTA 197 51 920 Antisense
GAGACCATTGCACACTGAAGATCGG 92 395 948 Antisense
Sequence Source Affymetrix Proprietary Database