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[185218_at]

Description F35D11.7 /REP_DB=WormBase Gene ID /WP=CE02720 /TR=Q20036 /GB=AAA68753.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 16.2
(-2.3)
A 		14
(-3)
A 		19.7
(-1.3)
A 		33.9
(3)
A 		20
B 13.5
(0)
A 		3.8
(-2.7)
A 		2.7
(-3)
A 		24
(3)
A 		21
C 2.5
(-3)
A 		27.1
(3)
A 		6.9
(-1.9)
A 		22.1
(1.8)
A 		25
avr 10.7
(-2.7) 		15
(-1.2) 		9.8
(-3) 		26.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 14.9
(-2.2)
A 		15.5
(-2.2)
A 		25.8
(-0.8)
A 		9.1
(-3)
A 		47.4
(2)
A 		55.3
(3)
A 		46
B 31
(3)
A 		4.5
(-2.7)
A 		22.4
(1.1)
A 		12.9
(-0.9)
A 		3.2
(-3)
A 		29.3
(2.6)
A 		28
C 2.6
(-3)
A 		4
(-2.7)
A 		11.4
(-1.3)
A 		7
(-2.2)
A 		5.9
(-2.4)
A 		33.7
(3)
A 		31
avr 16.2
(-1.4) 		8
(-3) 		19.9
(-0.7) 		9.7
(-2.7) 		18.8
(-0.9) 		39.4
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.9
(3)
A 		3
(-3)
A 		5.2
(1.6)
A 		5
(1.1)
A 		3
B 4.3
(1.9)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		5.1
(3)
A 		5
C 0.8
(-3)
A 		7.8
(3)
A 		2.4
(-1.6)
A 		3.7
(-0.5)
A 		7
avr 3.7
(0.2) 		3.9
(0.8) 		2.7
(-3) 		4.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.8
(-2.8)
A 		5.5
(-1.4)
A 		5.6
(-1.4)
A 		2.3
(-3)
A 		14.3
(3)
A 		13.5
(2.6)
A 		12
B 10.8
(2.9)
A 		1.5
(-2.9)
A 		5.4
(-0.4)
A 		3.4
(-1.7)
A 		1.3
(-3)
A 		10.9
(3)
A 		10
C 1
(-3)
A 		1.2
(-2.9)
A 		2.9
(-1.9)
A 		1.4
(-2.8)
A 		1.9
(-2.5)
A 		11.3
(3)
A 		10
avr 4.9
(-1.4) 		2.7
(-2.8) 		4.6
(-1.6) 		2.4
(-3) 		5.8
(-0.9) 		11.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5246
Sequence Type Exemplar sequence
Representative Public ID F35D11.7 NCBI
Target Description F35D11.7 /REP_DB=WormBase Gene ID /WP=CE02720 /TR=Q20036 /GB=AAA68753.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062412 NCBI Caenorhabditis elegans F35D11.7 (F35D11.7) mRNA, complete cds. 11/11 A 
SNAP00000013541 ENSEMBL cdna:SNAP chromosome:CEL140:II:4615664:4616520:-1 11/11 None
GENEFINDER00000013548 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4615664:4616520:-1 11/11 None
F35D11.7 ENSEMBL cdna:known chromosome:CEL140:II:4615622:4616520:-1 gene:F35D11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4615662-4616519(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.7
Entrez Gene 173799 Entrez gene
SwissProt Q20036 EMBL-EBI
WormBase CE32649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68753 Hypothetical protein F35D11.7 [Caenorhabditis elegans] ref|NP_494813.2| F35D11.7 [Caenorhabditis elegans] 1.0E-126
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 7.0E-45
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:185218_AT
tgctatttttgactgcggttttcgcaaaggatccacaatgcccagaagggttttctcatg
tcaagagagtcccaactgcaaggaacaatcatacaaaggactggtgtttgggcgttttcc
aattcaagaacatgggaaaccgagaccgagctcgatcattttgcagttatgtgaacgctt
cattgaccattccagaaaatgagcacgagattcaagtgttttctgaaatcgcccgagctc
atggaattgaagctccttatgctgttgacggtcaaatttctccaaaatgcaacggtcgta
ttaataaagtcgaaatcatacttcgtcatcgattcaacagtacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATTTTTGACTGCGGTTTTCGC 625 575 29 Antisense
TGCGGTTTTCGCAAAGGATCCACAA 510 583 42 Antisense
ATGCCCAGAAGGGTTTTCTCATGTC 24 43 66 Antisense
ATGTCAAGAGAGTCCCAACTGCAAG 441 45 86 Antisense
GACTGGTGTTTGGGCGTTTTCCAAT 112 375 127 Antisense
GAGACCGAGCTCGATCATTTTGCAG 648 393 170 Antisense
TGAACGCTTCATTGACCATTCCAGA 696 573 200 Antisense
AGTGTTTTCTGAAATCGCCCGAGCT 2 59 243 Antisense
AATCGCCCGAGCTCATGGAATTGAA 104 169 255 Antisense
GAAGCTCCTTATGCTGTTGACGGTC 461 339 277 Antisense
CTTCGTCATCGATTCAACAGTACAG 538 219 349 Antisense
Sequence Source Affymetrix Proprietary Database